A large number of software packages are available on the cluster, and for some of them, multiple versions of the same package. Software packages that are available on the cluster include:
Package Name | Versions | Tap | Module load | Notes | Description | Categories | Comments |
---|---|---|---|---|---|---|---|
Aria | Aria | Built against CNS 1.21, GNU compilers | |||||
Bio-BWA | Burrows-Wheeler Aligner | Biology, Genomics |
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Boost | Boost C++ libraries | Programming, Library |
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Bowtie | Bowtie ultrafast short read DNA aligner | Biology, Genomics |
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BLAST | BLAST: Basic Local Alignment Search Tool | Biology, Genomics |
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Matlab | Matlab Numerical computing environment | Numerical methods, Math |
Many modules available | ||||
Perl | Perl scripting language | Programming | Many modules available | ||||
VASP | Vienna Ab-initio Simulation Package | Chemistry | HPCC only; requires licensing | ||||