bowtie2: ultrafast sequence aligner

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: bowtie2
Description: ultrafast sequence aligner
For more information: http://bowtie-bio.sourceforge.net/bowtie2
Categories:
License: Unknown

General usage information

Bowtie2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s of characters to relatively long (e.g. mammalian) genomes.

This module will add the bowtie2 and related commands to your PATH

You might also wish to look at the bowtie package.

Available versions of the package bowtie2, by cluster

This section lists the available versions of the package bowtie2on the different clusters.

Available versions of bowtie2 on the Deepthought2 cluster (RHEL8)

Available versions of bowtie2 on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
2.3.5.1 bowtie2/2.3.5.1 ivybridge Y

Available versions of bowtie2 on the Juggernaut cluster

Available versions of bowtie2 on the Juggernaut cluster
Version Module tags CPU(s) optimized for GPU ready?
2.3.5.1 bowtie2/2.3.5.1 N