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Research at UMD using HPC Resources: Publications, etc.

This page is an incomplete collection of some of the publications, etc. that were made possible in part due to the High Performance Computing resources at the University of Maryland. If you are a researcher and wish to add your research using one of the Deepthought clusters to the list, please contact us.

Publications

Click on the title to see more information about a particular publication (if available). Click on an author to see more publications by that author. This same data is also available arranged by author or arranged by college and department.

2022

  1. Banik, Ananya, Yunsheng Liu, Saneyuki Ohno, Yannik Rudel, Alberto Jiménez-Solano, Andrei Gloskovskii, Nella M. Vargas-Barbosa, Yifei Mo and Wolfgang G. Zeier. Can substitutions affect the oxidative stability of lithium argyrodite solid electrolytes?. ACS Applied Energy Materials, 5, 2, 2045-2053 (2022). doi:10.1021/acsaem.1c03599
  2. Chen, Bo, Ulrich Leiste, Qiongyu Chen, William L. Fourney, and Teng Li. Correlation between Rockwell and Brinell Hardness Measurements. J Applied Mechanics 1-8 (2022). doi:10.1115/1.4054094
  3. Cui, Mingjin, Chunpeng Yang, Sooyeon Hwang, Menghao Yang, Sean Overa, Qi Dong, Yonggang Yao, Alexandra H. Brozena, David A. Cullen, Miaofang Chi, Thomas F. Blum, David Morris, Zou Finfrock, Xizheng Wang, Peng Zhang, Vitaliy G. Goncharov, Xiaofeng Guo, Jian Luo, Yifei Mo, Feng Jiao, Liangbing Hu. Multi-principal elemental intermetallic nanoparticles synthesized via a disorder-to-order transition. Science Advances, 8, 4 (2022). doi:10.1126/sciadv.abm4322
  4. Foulk, Nathan L., Robert E. Throckmorton, and S. Das Sarma. Dissipation and gate timing errors in SWAP operations of qubits. Phys Rev B 105, 155411 (2022). doi:10.1103/PhysRevB.105.155411
  5. Qian, Ji, Qiongyu Chen, Min Hong, Weiqi Xie, Shuangshuang Jing, Yinhua Bao, Gang Chen, Zhenqian Pang, Liangbing Hu, Teng Li. Toward stretchable batteries: 3D-printed deformable electrodes and separator enabled by nanocellulose. Materials Today (2022). doi:10.1016/j.mattod.2022.02.015
  6. Radue, Matthew S., Yifei Mo, R. E. Butera. Dopant precursor adsorption into single-dimer windows: Towards guided self-assembly of dopant arrays on Si(100). Chemical Physics Letters 787, 139258, (2022). doi:10.1016/j.cplett.2021.139258
  7. Saegusa, Takumi. Semiparametric Inference for Merged Data from Multiple Data Sources.. Journal of Statistical Planning and Inference Volume 216, January 2022, Pages 1-14. doi:10.1016/j.jspi.2021.05.002
  8. Tang, Zhenyu, Rohith Aralikatti, Anton Jeran Ratnarajah, and Dinesh Manocha. GWA: A Large High-Quality Acoustic Dataset for Audio Processing. In ACM SIGGRAPH 2022 Conference Proceedings (SIGGRAPH '22). Association for Computing Machinery, New York, NY, USA, Article 36, 1-9. doi:10.1145/3528233.3530731
  9. Throckmorton, Robert E. and S. Das Sarma. Crosstalk- and charge-noise-induced multiqubit decoherence in exchange-coupled quantum dot spin qubit arrays. Phys. Rev. B 105, 245413 (2022). doi:10.1103/PhysRevB.105.245413
  10. Wang, Hongyu, Chen-Fei Liu, Robert T. Martin, Osvaldo Gutierrez and Ming Joo Koh. Directing-group-free catalytic dicarbofunctionalization of unactivated alkenes. Nat. Chem. 2022, 14, 188-195. doi:10.1038/s41557-021-00836-6

2021

  1. Adelaide M. Nolan, Eric D. Wachsman, Yifei Mo. Computation-Guided Discovery of Coating Materials to Stabilize the Interface between Lithium Garnet Solid Electrolyte and High-Energy Cathodes for All-Solid-State Lithium Batteries. Energy Storage Materials 41,571-580, (2021). doi:10.1016/j.ensm.2021.06.027
  2. Agarwal, Vipin, Rui Wang, and Balakumar Balachandran. Data driven forecasting of aperiodic motions of non-autonomous systems. Chaos 31, 021105 (2021). doi:10.1063/5.0045004
  3. Agrawal, Toolika, Robert T. Martin, Stephen Collins, Zachary Wilhelm, Mytia D. Edwards, Osvaldo Gutierrez, and Joshua D. Sieber. Access to Chiral Diamine Derivatives through Stereoselective Cu-Catalyzed Reductive Coupling of Imines and Allenamides. J. Org. Chem. 2021, 86, 5026-5046. doi:10.1021/acs.joc.0c02971
  4. Ahmed, Mohamed M. and Arnaud Trouvé. Large eddy simulation of the unstable flame structure and gas-to-liquid thermal feedback in a medium-scale methanol pool fire. Combust. Flame,225:237-254 (2021). doi:10.1016/j.combustflame.2020.10.055
  5. Ahmed, Mohamed Mohsen and Arnaud Trouvé. Simulations of the unsteady response of biomass burning particles exposed to oscillatory heat flux conditions. 13th Symposium of the International Association for Fire Safety Science (IAFSS).
  6. Allsopp, Robert .J, and Jeffrey B. Klauda. Impact of PIP2 Lipids and Force Field Parameters on the Binding of Osh4's α6-α7 Doma. n Journal of Physical Chemistry B. 125: 5293-5308 (2021). doi:10.1021/acs.jpcb.0c10393
  7. Arias, Paulo, James Baeder, Yong Su Jung. Aeroacoustic Analysis of Asymmetric Lift-Offset Helicopter in Forward Flight. 77th Annual Forum Proceedings of the Vertical Flight Society, Virtual, 2021.
  8. Bai, Hao, Yanghua He, Yanli Lin, Qixin Leng, José A. Carrillo, Jianan Liu, Feng Jiang, Jilan Chen, and Jiuzhou Song. Identification of a novel differentially methylated region adjacent to ATG16L2 in lung cancer cells using methyl-CpG binding domain protein-enriched genome sequencing.. Genome. 2021 May;64(5):533-546. doi:10.1139/gen-2020-0071
  9. Bogdanov, Slavko, Alexander J. Dittmann, Wynn C. G. Ho, Frederick K. Lamb, Simin Mahmoodifar, M. Coleman Miller, Sharon M. Morsink, Thomas E. Riley, Tod E. Strohmayer, Anna L. Watts. Constraining the Neutron Star Mass–Radius Relation and Dense Matter Equation of State with NICER. III. Model Description and Verification of Parameter Estimation Codes. The Astrophysical Journal Letters, Volume 914 L15 (2021). doi:10.3847/2041-8213/abfb79
  10. Butler, C., T. Whalen, C. Sousa, and S. J. Laurence. Dynamics of a spherical body shedding from a hypersonic ramp. Part 2. Viscous flow. Journal of Fluid Mechanics, 906:A29, 2021. doi:10.1017/jfm.2020.757
  11. Cai, Wentao, Cong Li, Junya Li, Jiuzhou Song and Shengli Zhang. Integrated Small RNA Sequencing, Transcriptome and GWAS Data Reveal microRNA Regulation in Response to Milk Protein Traits in Chinese Holstein Cattle.. Front. Genet., 12 October 2021. doi:10.3389/fgene.2021.726706
  12. Campbell, Mark W., Mingbin Yuan, Viktor C. Polites, Osvaldo Gutierrez, and Gary A. Molander. Photochemical C-H Activation Enables Nickel-Catalyzed Olefin Dicarbofunctionalization. J. Am. Chem. Soc. 2021, 143, 10, 3901-3910. doi:10.1021/jacs.0c13077
  13. Chakraborty, Samarpan and Balakumar Balachandran. Wave Propagation Studies in Numerical Wave Tanks with Weakly Compressible Smoothed Particle Hydrodynamics. J. Mar. Sci. Eng. 2021, 9(2), 233.
  14. Chen, Bo, Ulrich H. Leiste, William L. Fourney, Yu Liu, Qiongyu Chen and Teng Li. Hardened wood as a renewable alternative to steel and plastic. Matter 4(12) (2021). doi:10.1016/j.matt.2021.09.020
  15. Cui, R., D. Cui, C. Dahl, C. Squire, L. Clarke, N. Hultman. A global plant-by-plant coal phase-out strategy.. Policy Brief. Center for Global Sustainability, Dec 2021.
  16. Cui, Ryna Yiyun, Nathan Hultman, Diyang Cui, Haewon McJeon, Sha Yu, Morgan R. Edwards, Arijit Sen, Kaihui Song, Christina Bowman, Leon Clarke, Junjie Kang, Jiehong Lou, Fuqiang Yang, Jiahai Yuan, Weirong Zhang and Mengye Zhu. A plant-by-plant strategy for high-ambition coal power phaseout in China. Nat Commun 12, 1468 (2021). doi:10.1038/s41467-021-21786-0
  17. DeMuth, Joshua C, Zhihui Song, Stephanie H Carpenter, Theresa E Boddie, Aleksa Radović, Tessa M Baker, Osvaldo Gutierrez, Michael L Neidig. Experimental and computational studies of the mechanism of iron-catalysed C-H activation/functionalisation with allyl electrophiles. Chem. Sci. 2021, 12, 9398-9407. doi:10.1039/d1sc01661j
  18. Dittmann, Alexander J. and Geoffrey Ryan. Preventing Anomalous Torques in Circumbinary Accretion Simulations. The Astrophysical Journal, Volume 921 71, (2021). doi:10.3847/1538-4357/ac1bbd
  19. Eller, Benjamin, Jacek Klos, YuHuang Wang, and Charles Clark. Finite (6,6) Single-Walled Carbon Nanotubes with Organic Surface Defects as Candidate Single Photon Emitters. APS DAMOP Annual Meeting 2021, May 31-June 4, 2021.
  20. Eller, Benjamin, Jacek Klos, YuHuang Wang, and Charles Clark. Finite (6,6) Single-Walled Carbon Nanotubes with Organic Surface Defects as Candidate Single Photon Emitters. NT21: International Conference on the Science and Application of Nanotubes and Low-Dimensional Materials, June 6-11, 2021. Rice University, Houston, Texas, United States.
  21. Etha, Sai Ankit, Parth Rakesh Desai, Harnoor Singh Sachar, and Siddhartha Das. Wetting Dynamics on Solvophilic, Soft, Porous, and Responsive Surfaces. Macromolecules 2021,52,2,584-596. doi:10.1021/acs.macromol.0c02234
  22. Faust, Jan-Arun, Yong Su Jung, James Baeder, André Bauknecht, and Jürgen Rauleder. Interactional Aerodynamic Analysis of an Asymmetric Lift-Offset Compound Helicopter in Forward Flight. Journal of the American Helicopter Society, Vol. 66, 2021. doi:10.4050/JAHS.66.032011
  23. Gan, Wentao, Lianping Wu, Yaoxing Wang, He Gao, Likun Gao, Shaoliang Xiao, Jiuqing Liu, Yanjun Xie, Teng Li, Jian Li. Carbonized Wood Decorated with Cobalt-Nickel Binary Nanoparticles as a Low-Cost and Efficient Electrode for Water Splitting. Advanced Functional Materials 31(29) (2021). doi:10.1002/adfm.202010951
  24. Gopal, A., P. S. Volpiani, S. Yellapantula and J. Larsson. Computational investigation of real fluid effects in cryogenic laminar premixed CH4-O2 flames. J. Supercrit. Fluids 168, 105045, 2021. doi:10.1016/j.supflu.2020.105045
  25. He, Chengjian, Chris Ware, Seungjoon Yang, Jeewoong Kim, James Baeder, and Yong Su Jung. eVTOL Rotor Noise Study Using Comprehensive Modeling Combined with Acoustic Analysis. 77th Annual Forum Proceedings of the Vertical Flight Society, Virtual, 2021.
  26. Hultman, Nate, Kevin Kennedy, Leon Clarke, Haewon McJeon, Tom Cyrs, John O'Neill, Alicia Zhao, Jenna Behrendt, Wendy Jaglom, Todd McGarvey, John Feldmann, Ryna Cui, Kowan O'Keefe. An All-In climate strategy can cut U.S. emissions by 50% by 2030.. Working paper. America is All In. April 2021.
  27. Hultman, Nate, Kevin Kennedy, Leon Clarke, Haewon McJeon, Tom Cyrs, John O’Neill, Alicia Zhao, Jenna Behrendt, Wendy Jaglom, Todd McGarvey, John Feldmann, Ryna Cui, and Kowan O’Keefe. An All-In climate strategy can cut U.S. emissions by 50% by 2030. Center for Global Sustainability Working Paper. College Park, MD: University of Maryland Center for Global Sustainability.
  28. Hultman, Nathan Leon Clarke, Haewon McJeon, Ryna Cui, Pete Hansel, Emily McGlynn, Kowan O'Keefe, John O'Neill, Celeste Wanner, Alicia Zhao. Charting an ambitious U.S. NDC of 51% reduction by 2030. Working paper. Center for Global Sustainability at University of Maryland. Feb, 2021.
  29. Hultman, Nathan, Leon Clarke, Haewon McJeon, Ryna Cui, Pete Hansel, Emily McGlynn, Kowan O’Keefe, John O’Neill, Celeste Wanner, and Alicia Zhao. Charting an ambitious U.S. NDC of 51% reduction by 2030.. Center for Global Sustainability Working Paper. College Park, MD: University of Maryland Center for Global Sustainability. 5pp.
  30. Islam, Md Shafiqul, Shuo Wang, Adelaide M. Nolan, Yifei Mo. First-Principles Computational Design and Discovery of Novel Double-Perovskite Proton Conductors. Chemistry of Materials 33, 8278-8288 (2021). doi:10.1021/acs.chemmater.1c02432
  31. Jia, Cunling, Ying Bai, Jianan Liu, Wentao Cai, Lei Liu, Yanghua He and Jiuzhou Song. Metabolic Regulations by lncRNA, miRNA, and ceRNA Under Grass-Fed and Grain-Fed Regimens in Angus Beef Cattle.. Front. Genet., 04 March 2021. doi:10.3389/fgene.2021.579393
  32. Jiang, Rongsheng Lei Sun, Chao Sun & Xin-Zhong Liang. CWRF downscaling and understanding of China precipitation projections.. Climate Dynamics, (2021) 1-18. doi:10.1007/s00382-021-05759-z
  33. Jung, Yong Su, James Baeder, and Chengjian He. Investigation of Empirical Rotor Broadband Prediction using CFD Boundary Layer Parameters Extraction. 77th Annual Forum Proceedings of the Vertical Flight Society, Virtual, 2021.
  34. Kennedy K., W. Jaglom, N. Hultman, E. Bridgwater, R. Mendell, H. Leslie-Bole, L. Rowland, E. McGlynn, T. Massey-Green, T. Cyrs, L. Clarke, H. McJeon, A. Zhao, J. O'Neill, R. Gasper, J. Feldmann, K. O'Keefe, R. Cui, S. Kennedy, J. Zhao, and H. Kazanecki. Stronger Together: An All-In Climate Strategy for Faster, More Durable Emissions Reductions. America Is All In. (2021).
  35. Kholodovsky, Vitaly and Xin-Zhong Liang. A generalized Spatio-Temporal Threshold Clustering method for identification of extreme event patterns.. Advances in Statistical Climatology, Meteorology and Oceanography, 7(1), 35-52 (2021). doi:10.5194/ascmo-7-35-2021
  36. Kłos, Jacek, Paul J Dagdigian, and François Lique. Collisional excitation of C+(2P) spin-orbit levels by molecular hydrogen revisited. Monthly Notices of the Royal Astronomical Society: Letters, Volume 501, Issue 1, February 2021, Pages L38–L42. doi:https://doi.org/10.1093/mnrasl/slaa192
  37. Lee, Bumseok. Development of a Laminar-Turbulent Transition Model and Blended Time-Marching Schemes for Rotorcraft CFD Application. Doctoral Dissertation, Department of Aerospace Engineering, University of Maryland, 2021.
  38. Lee, Bumseok and James D. Baeder. Prediction and Validation of Laminar-Turbulent Transition using SA-gamma transition model. AIAA Scitech 2021 Forum, Virtual, 2021. doi:10.2514/6.2021-1532
  39. Lee, Bumseok and James D. Baeder. The effect of time marching on the wake structure breakdown in a hovering rotor simulation. AIAA Scitech 2021 Forum, Virtual, 2021. doi:10.2514/6.2021-0736
  40. Li, Tangyuan, Yonggang Yao, Zhennan Huang, Pengfei Xie, Zhenyu Liu, Menghao Yang, Jinlong Gao, Kaizhu Zeng, Alexandra H. Brozena, Glenn Pastel, Miaolun Jiao, Qi Dong, Jiaqi Dai, Shuke Li, Han Zong, Miaofang Chi, Jian Luo, Yifei Mo, Guofeng Wang, Chao Wang, Reza Shahbazian-Yassar, Liangbing Hu. Denary oxide nanoparticles as highly stable catalysts for methane combustion. Nature Catalysis 4, 62-70 (2021). doi:10.1038/s41929-020-00554-1
  41. Liu, Chen-Fei, Hongyu Wang, Robert T. Martin, Haonan Zhao, Osvaldo Gutierrez and Ming Joo Koh. Olefin functionalization/isomerization enables stereoselective alkene synthesis. Nat. Catal. 2021, 4, 674-683. doi:10.1038/s41929-021-00658-2
  42. Lumba, Ravi and Anubhav Datta. Scalable Mesh Partitioning for Large-Scale 3D Finite Element Multibody Structures. IAA Scitech 2021 Forum, January 11-15 & 19-21, 2021.
  43. Miller, M. C., F. K. Lamb, A. J. Dittmann, S. Bogdanov, Z. Arzoumanian, K. C. Gendreau, S. Guillot, W. C. G. Ho, J. M. Lattimer, M. Loewenstein. The Radius of PSR J0740+6620 from NICER and XMM-Newton Data. The Astrophysical Journal Letters, Volume 918 L28 (2021). doi:10.3847/2041-8213/ac089b
  44. Mo, Chen, Zhenyao Ye, Hongjie Ke, Tong Lu, Travis Canida, Song Liu, Qiong Wu, Zhiwei Zhao, Yizhou Ma, L. Elliot Hong, Peter Kochunov, Tianzhou Ma, Shuo Chen. A new Mendelian Randomization method to estimate causal effects of multivariable brain imaging exposures. Pacific Symposium on Biocomputing (PSB) 2022. doi:10.1101/2021.10.01.462221v1
  45. Mo, Yifei. Computation Accelerated Design of Materials and Interfaces for All-Solid-State Li-ion Batteries. TRI seminar, Massachusetts Institute of Technology (04/2021) (Invited).
  46. Mo, Yifei. Computation Accelerated Design of Materials and Interfaces for Solid-State Batteries. Phonon Science Seminar, SLAC (virtual) (05/2021) (Invited).
  47. Mo, Yifei. Data-Driven Discovery of New Materials for Solid-State Batteries. 5th Forum of Materials Genome Engineering, Zhengzhou, China (virtual) (12/2021) (Invited).
  48. Mo, Yifei. Interfacial Failure of Lithium Metal in Solid-State Batteries : Insight from Large-Scale Atomistic Modeling. Beyond Lithium Ion XIII, Argonne National Laboratory (virtual) (06/2021) (Invited).
  49. Mo, Yifei. Interfacial Failure of Lithium Metal in Solid-State Batteries : Insight from Large-Scale Atomistic Modeling. International Battery Materials Association(IBA) 2021 Annual meeting in Xiamen, China (virtual) (10/2021) (Invited).
  50. Mo, Yifei. Interfacial Failure of Lithium Metal in Solid-State Batteries : Insight from Large-Scale Atomistic Modeling. World Conference on Solid Electrolytes for Advanced Applications (virtual) (10/2021) (Invited).
  51. Mo, Yifei. Understanding Interfacial Atomistic Mechanisms of Lithium Metal Stripping and Plating in Solid-State Batteries : Insights from Atomistic Modeling. ACS Spring meeting 2021 (04/2021) (Invited).
  52. Mo, Yifei. Understanding Interfacial Atomistic Mechanisms of Lithium Metal Stripping and Plating in Solid-State Batteries : Insights from Atomistic Modeling. MRS Spring meeting 2021, Seattle, WA (virtual) (04/2021) (Invited).
  53. Nolan, Adelaide M., Darshana Wickramaratne, Noam Bernstein, Yifei Mo, Michelle D. Johannes. Li+ Diffusion in Amorphous and Crystalline Al2O3 for Battery Electrode Coatings. Chemistry of Materials 33, 19, 7795-7804 (2021). doi:10.1021/acs.chemmater.1c02239
  54. Olondo Kuba, Jacob Yalun Yu, and Jeffery B.Klauda. Estimating Localization of Various Statins within a POPC Bilayer. Chemistry and Physics of Lipids. 236: 105074 (2021). doi:10.1016/j.chemphyslip.2021.105074
  55. Pang, Zhenqian and Teng Li. Mechanics and strain engineering of bulk and monolayer Bi2O2Se. Journal of the Mechanics and Physics of Solids 157 (2021). doi:10.1016/j.jmps.2021.104626
  56. Pial, Turash Haque, Harnoor Singh Sachar, Parth Rakesh Desai, and Siddhartha Das. Overscreening, Coion-Dominated Electroosmosis, and Electric Field Strength Mediated Flow Reversal in Polyelectrolyte Brush Functionalized Nanochannels. ACS Nano 2021. doi:10.1021/acsnano.0c09248
  57. Potsdam, Mark, Bumseok Lee, Yong Su Jung, and James Baeder. Hub Flow Near-Wake Validation using CREATETM-AV Helios and UMD Mercury Framework. 77th Annual Forum Proceedings of the Vertical Flight Society, Virtual, 2021.
  58. Radue, Matthew S., Sungha Baek, Azadeh Farzaneh, K. J. Dwyer, Quinn Campbell, Andrew D. Baczewski, Ezra Bussmann, George T. Wang, Yifei Mo, Shashank Misra, R. E. Butera. AlCl3-Dosed Si(100)-2 x 1: Adsorbates, Chlorinated Al Chains, and Incorporated Al. The Journal of Physical Chemistry C, 125, 21, 11336-11347 (2021). doi:10.1021/acs.jpcc.1c00691
  59. Ravula, Preethi, Gizem Acar, and Balakumar Balachandran. Discrete element method-based studies on dynamic interactions of a lugged wheel with granular media. Journal of Terramechanics, Vol. 94, pp. 49-62, (2021). doi:10.1016/j.jterra.2021.01.002
  60. Ray, Upamanyu, Zhenqian Pang, and Teng Li. Mechanics of cellulose nanopaper using a scalable coarse-grained modeling scheme. Cellulose 28(4):1-14 (2021). doi:10.1007/s10570-021-03740-x
  61. Rui Xu, Van Minh Le, Alexis Marchand, Thomas Rogaume, Franck Richard, Jocelyn Luche and Arnaud Trouvé. The unsteady response of radiating laminar diffusion flames exposed to decreasing mixing rate conditions representative of fires. Combust. Theory Modelling, 25:1-21 (2021). doi:10.1080/13647830.2020.1823021
  62. Sachar, Harnoor Singh, Bhargav Sai Chava, Turash Haque Pial, and Siddhartha Das. Hydrogen Bonding and Its Effect on the Orientational Dynamics of Water Molecules inside Polyelectrolyte Brush-Induced Soft and Active Nanoconfinement. Macromolecules 2021, 54 2011-2021. doi:10.1021/acs.macromol.0c02813
  63. Saegusa, Takumi. Mann-Whitney test for two-phase stratified sampling. Stat. 2021; 10:e321. doi:10.1002/sta4.321
  64. Saegusa, Takumi. Nonparametric inference for distribution functions with stratified samples. Journal of Statistical Planning and Inference Volume 215, December 2021, Pages 356-367. doi:10.1016/j.jspi.2021.05.001
  65. Saegusa, Takumi, Zhiwei Zhao, Hongjie Ke, Zhenyao Ye, Zhongying Xu, Shuo Chen & Tianzhou Ma. Detecting survival-associated biomarkers from heterogeneous populations. Sci Rep 11, 3203 (2021). doi:10.1038/s41598-021-82332-y
  66. Sanglia, Aditya N., Amir Riaz, and David I. Bigio. Effect of inertia on capillary-driven breakup of drops surrounded by another fluid. Physics of Fluids 33, 112112 (2021). doi:10.1063/5.0065754
  67. Seyed Mohammad Sajadi, Lívia Vásárhelyi, Reza Mousavi, Amir Hossein Rahmati, Zoltán K, Akos Kukovecz, Taib Arif, Tobin Filleter, Robert Vajtai, Peter Boul, Zhenqian Pang,Teng Li, Chandra Sekhar Tiwary, Muhammad M. Rahman, and Pulickel M. Ajayan. Damage-tolerant 3D-printed ceramics via conformal coating. Science Advances 7(28) (2021). doi:10.1126/sciadv.abc5028
  68. Shi, Wenru Haishan Chen, and Xin-Zhong Liang. CWRF-based ensemble simulation of tropical cyclone activity near China and its sensitivity to the model physical parameterization schemes.. Atmospheric and Oceanic Science Letters (14) 1 2021. doi:10.1016/j.aosl.2020.100004
  69. Shumin Zhang, Feipeng Zhao, Shuo Wang, Jianwen Liang, Jian Wang, Changhong Wang, Hao Zhang, Keegan Adair, Weihan Li, Minsi Li, Hui Duan, Yang Zhao, Ruizhi Yu, Ruying Li, Huan Huang, Li Zhang, Shangqian Zhao, Shigang Lu, Tsun-Kong Sham, Yifei Mo, Xueliang Sun. Advanced High-Voltage All-Solid-State Li-Ion Batteries Enabled by a Dual-Halogen Solid Electrolyte. Advanced Energy Materials 11, 2100836 (2021). doi:10.1002/aenm.202100836
  70. Smith, Zachary and Pratyush Tiwary. Making High-Dimensional Molecular Distribution Functions Tractable through Belief Propagation on Factor Graphs. J. Phys. Chem. B 2021, 125, 40, 11150-11158. doi:10.1021/acs.jpcb.1c05717
  71. Thompson, Richard R., Madeline E. Rotella, Xin Zhou, Frank R. Fronczek, Osvaldo Gutierrez, and Semin Lee. Impact of Ligands and Metals on the Formation of Metallacyclic Intermediates and a Nontraditional Mechanism for Group VI Alkyne Metathesis Catalysts. J. Am. Chem. Soc. 2021, 143, 9026-9039. doi:10.1021/jacs.1c01843
  72. Tsai, Sun-Ting Tsai, Zachary Smith, and Pratyush Tiwary. SGOOP-d: Estimating Kinetic Distances and Reaction Coordinate Dimensionality for Rare Event Systems from Biased/Unbiased Simulations. J. Chem. Theory Comput. 2021. doi:10.1021/acs.jctc.1c00431
  73. Tsai, Sun-Ting and Pratyush Tiwary. On the distance between A and B in molecular configuration space. Molecular Simulation, 47:5, 449-456. doi:10.1080/08927022.2020.1761548
  74. Tsyshevsky, Roman, Monica McEntee, Erin M Durke, Christopher Karwacki, and Maija M Kuklja. Degradation of Fatal Toxic Nerve Agents on Dry TiO2. ACS Appl. Mater. Interfaces, 13(1):696-705 (2021). doi:10.1021/acsami.0c19261
  75. Wang, Dedi and Pratyush Tiwary. State predictive information bottleneck. J. Chem. Phys. 154, 134111 (2021). doi:10.1063/5.0038198
  76. Wu, Lianping, Tian Guo, and Teng Li. Machine learning-accelerated prediction of overpotential of oxygen evolution reaction of single-atom catalysts. iScience 24(5) (2021). doi:10.1016/j.isci.2021.102398
  77. Wu, Qiong, Tianzhou Ma, Qingzhi Liu, Donald K Milton, Yuan Zhang, Shuo Chen. ICN: extracting interconnected communities in gene co-expression networks. Bioinformatics, Volume 37, Issue 14, 15 July 2021, Pages 1997-2003. doi:10.1093/bioinformatics/btab047
  78. Xu, Rui, Van Minh Le, Alexis Marchand, Salman Verma, Thomas Rogaume, Franck Richard, Jocelyn Luche, Arnaud Trouvé. Simulations of the coupling between combustion and radiation in a turbulent line fire using an unsteady flamelet model. 13th Symposium of the International Association for Fire Safety Science (IAFSS).
  79. Yang, Menghao and Yifei Mo. Interfacial Defect of Lithium Metal in Solid-State Batteries. Angewandte Chemie Int. Ed. 60, 21494, (2021). doi:10.1002/anie.202108144
  80. Yang, Menghao, Yunsheng Liu, Adelaide M. Nolan, Yifei Mo. Interfacial Atomistic Mechanisms of Lithium Metal Stripping and Plating in Solid-State Batteries. Advanced Materials 2021, 33, 2008081. doi:10.1002/adma.202008081
  81. Ye, Zhenyao, Chen Mo, Song Liu, Kathryn S. Hatch, Si Gao, Yizhou Ma, L. Elliot Hong, Paul M. Thompson, Neda Jahanshad, Ashley Acheson, Hugh Garavan, Li Shen, Thomas E. Nichols, Peter Kochunov, Shuo Chen and Tianzhou Ma. White Matter Integrity and Nicotine Dependence: Evaluating Vertical and Horizontal Pleiotropy. Front. Neurosci., 14 October 2021. doi:10.3389/fnins.2021.738037
  82. Ye, Zhenyao, Hongjie Ke, Shuo Chen, Raul Cruz-Cano, Xin He, Jing Zhang, Joanne Dorgan, Donald K. Milton and Tianzhou Ma. Biomarker Categorization in Transcriptomic Meta-Analysis by Concordant Patterns With Application to Pan-Cancer Studies. Front. Genet., 02 July 2021. doi:10.3389/fgene.2021.651546
  83. Yuan, Mingbin and Osvaldo Gutierrez. Mechanisms, challenges, and opportunities of dual Ni/photoredox-catalyzed C(sp2)-C(sp3) cross-couplings. WIREs Comput Mol Sci. 2021;e1573. doi:10.1002/wcms.1573
  84. Yuan, Yiding, Yalun Yu, and Jeffery B. Klauda. Simulations of Diabetic and Non-Diabetic Peripheral Nerve Myelin Lipid Bilayers. Journal of Physical Chemistry B. 125: 6201-6213 (2021). doi:10.1021/acs.jpcb.1c01621
  85. Zhang, Ke, Chong He, Yangbin Xu, Chenguang Zhang, Chao Li, Xu Jing, Meili Wang, Yuxin Yang, Langda Suo, Peter Kalds, Jiuzhou Song, Xiaolong Wang, Daniel Brugger, Yujiang Wu, and Yulin Chen. Taxonomic and functional adaption of the gastrointestinal microbiome of goats kept at high altitude (4800 m) under intensive or extensive rearing conditions.. FEMS Microbiol Ecol. 2021 Mar 8;97(3):fiab009. doi: 10.1093/femsec/fiab009

2020

  1. Ahmad, J. and B. A. Forman. Diagnostic analysis of a data assimilation framework for improving snow mass estimation in complex terrain. International Geoscience and Remote Sensing Symposium (IGARSS) Annual Meeting, Waikoloa, Hawaii, United States, 2020.
  2. Ahmad, J. and B. A. Forman. Utilizing ensemble-based data assimilation and the NASA Land Information System to improve soil moisture estimation across high mountain Asia. American Geophysical Union Annual Meeting, San Francisco, California, United States, 2020.
  3. Bai, Ying, Jos A. Carrillo, Yaokun Li, Yanghua He and Jiuzhou Song. Correction to: Diet induced the change of mtDNA copy number and metabolism in Angus cattle.. J Anim Sci Biotechnol. 2020 Aug 25;11:95. doi:10.1186/s40104-020-00504-8
  4. Bai, Ying, Ping Yuan, Huanmin Zhang, Ramesh Ramachandran, Ning Yang, Jiuzhou Song. Adiponectin and its receptor genes expression in response to MDV infection of White Leghorns. Poultry Science. Sep(99)9:4249-4258 (2020). doi:10.1016/j.psj.2020.06.004
  5. Bussi, Giovanni, Alessandro Laio, Pratyush Tiwary. Metadynamics: A unified framework for accelerating rare events and sampling thermodynamics and kinetics. Handbook of Materials Modeling: Methods: Theory and Modeling, p.565–595 (2020). doi:10.1007/978-3-319-42913-7_49-1
  6. Cai, Wentao, Lijun Shi, Mingyue Cao, Dan Shen, Junya Li, Shengli Zhang and Jiuzhou Song. Pan-RNA editing analysis in bovine genome. RNA biology 18:3 (2021). doi:10.1080/15476286.2020.1807724
  7. Cao, Daxian, Yubin Zhang, Adelaide M. Nolan, Jinzhi Sheng, Yifei Mo, Yan Wang, Hongli Zhu. Stable Thiophosphate-based All-Solid-State Lithium Batteries through Conformally Interfacial Nano Coating. Nano Lett. 2020, 20, 3, 1483-1490. doi:10.1021/acs.nanolett.9b02678
  8. Chava, Bhargav Sai, Yanbin Wang, Vishal Sankar Sivasankar, Siddhartha Das. Water-free Localization of Anion at Anode for Small-Concentration Water-in-Salt Electrolytes Confined in Boron-Nitride Nanotube. Cell Reports Physical Science 1, 100246 (2020). doi:10.1016/j.xcrp.2020.100246
  9. Chen, Chaoji, Jianwei Song, Jian Cheng, Zhenqian Pang, Wentao Gan, Gegu Chen, Yudi Kuang, Hao Huang, Upamanyu Ray, Teng Li, and Liangbing Hu. Highly Elastic Hydrated Cellulosic Materials with Durable Compressibility and Tunable Conductivity. ACS Nano Article ASAP. doi:10.1021/acsnano.0c04298
  10. Chunping Zhao, Guanyu Ji, José A. Carrillo, Yaokun Li, Fei Tian, Ransom L. Baldwin VI, Linsen Zan and Jiuzhou Song. The Profiling of DNA Methylation and its Regulation on Divergent Tenderness in Angus Beef Cattle. Front. Genet. 2020 Aug 26;11:939. doi:10.3389/fgene.2020.00939
  11. Cui, R., N. Hultman, K. Jiang, H. McJeon, S. Yu, D. Cui, M. Edwards, A. Sen, K. Song, C. Bowman, L. Clarke, J. Kang, F. Yang, J. Yuan, W. Zhang. A High Ambition Coal Phaseout in China: Feasible Strategies through a Comprehensive Plant-by-Plant Assessment. Center for Global Sustainability: College Park, Maryland. 37 pp. (2020).
  12. Erickson, Brittany A., Junle Jiang, Michael Barall, Nadia Lapusta, Eric M. Dunham, Ruth Harris, Lauren S. Abrahams, Kali L. Allison, Jean-Paul Ampuero, Sylvain Barbot, Camilla Cattania, Ahmed Elbanna, Yuri Fialko, Benjamin Idini, Jeremy E. Kozdon, Valère Lambert, Yajing Liu, Yingdi Luo, Xiao Ma, Maricela Best McKay, Paul Segall, Pengcheng Shi, Martijn van den Ende, Meng Wei. The community code verification exercise for simulating sequences of earthquakes and aseismic slip (SEAS).. Seismological Research Letters; 91 (2A): 874-890, (2020). doi: https://doi.org/10.1785/0220190248
  13. Forman, B. A., S. V. Kumar, P. Grogan, L. Wang, Y. Kwon, P. Grogan, R. S. Kim, and Y. Yoon. Exploring the next generation of land surface remote sensing: A comparative analysis of passive optical, passive microwave, active microwave, and LiDAR Retrievals. NASA Earth Science Technology Forum, Dulles, Virginia, United States, 2020.
  14. Forman, B. A., S. V. Kumar, P. Grogan, L. Wang, Y. Kwon, R. S. Kim, and Y. Yoon. What is the optimal mixture of space-borne sensors for remote sensing of terrestrial freshwater?: A comparative analysis of passive optical, passive microwave, active microwave, and LiDAR retrievals. American Geophysical Union Annual Meeting, San Francisco, California, UnitedStates, 2020.
  15. Guo, Lei, Mingbin Yuan, Yanyan Zhang, Fang Wang, Shengqing Zhu, Osvaldo Gutierrez, and Lingling Chu. General Method for Enantioselective Three-Component Carboarylation of Alkenes Enabled by Visible-Light Dual Photoredox/Nickel Catalysis. J. Am. Chem. Soc. 2020, 142, 48, 20390-23099. doi:10.1021/jacs.0c08823
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  17. Hao Bai, Yanghua He, Yi Ding, Qin Chu, Ling Lian, Eliyahu M. Heifetz, Ning Yang, Hans H. Cheng, Huanmin Zhang, Jilan Chen & Jiuzhou Song. Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek's disease using next generation sequencing. BMC Genet. 2020 Jul 16;21(1):77. doi:10.1186/s12863-020-00884-w
  18. He, Chong-Chong, Massimo Ricotti, Sam Geen. Simulating star clusters across cosmic time - II. Escape fraction of ionizing photons from molecular clouds. Monthly Notices of the Royal Astronomical Society 492: 4858–4873 (2020). doi:10.1093/mnras/staa165
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  20. Jan-Arun Faust, Yong Su Jung, James Baeder, Jürgen Rauleder. Aerodynamic Analysis of an Asymmetric Lift-Offset Compound Helicopter in Forward Flight using the Mercury CFD Framework. Vertical Flight Society Aeromechanics for Advanced Vertical Flight Technical Meeting, San Jose, CA, January 21-23, (2020).
  21. Jan-Erik Schumann, Siavash Toosi and Johan Larsson. Assessment of grid anisotropy effects on large-eddy simulation models with different length scales. AIAA J. 58, 4522-4533, 2020. doi:10.2514/1.J059576
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  27. Jongmin Park, Barton A. Forman, Rolf H. Reichle, Gabrielle De Lannoy and Saad B. Tarik. Evaluation of GEOS-Simulated L-Band Microwave Brightness Temperature Using Aquarius Observations over Non-Frozen Land across North America. Remote Sens. 2020, 12(18), 3098. doi:10.3390/rs12183098
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  29. Jung, Yong Su and James Baeder. Simulations for Effect of Surface Roughness on Wind Turbine Aerodynamic Performance. Journal of Physics: Conference series, Vol. 1452: 012055, (2020). doi:10.1088/1742-6596/1452/1/012055
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  88. Wang, Xing & Jung, Yong Su & Baeder, James & Chopra, Inderjit. Blade Structural Load/Airload Correlation on a Slowed Mach-Scaled Rotor at High Advance Ratios. Journal of the American Helicopter Society, Vol 65, No 4 pp. 1-14, 2020. doi:10.4050/JAHS.65.042003
  89. Wang, YuHuang. Photochemical Creation of Organic Color-Centers.. Symposium for Quantum Information Sciences (QIS), CINT User Meeting, Los Alamos National Laboratory. Sept. 21-23, 2020.
  90. West, Ana, Valeria Zoni, Walter E Teague Jr, Alison N Leonard, Stefano Vanni, Klaus Gawrisch, Stephanie Tristram-Nagle, Jonathan N Sachs, Jeffery B Klauda. How do Ethanolamine Plasmalogens Contribute to Order and Structure of Neurological Membranes?. Journal of Physical Chemistry B. 124: 828-839 (2020). doi:10.1021/acs.jpcb.9b08850
  91. William Miller and Da-Lin Zhang. Tracing extreme updrafts in Hurricane Wilma (2005) to their boundary layer roots using trajectories: A thermodynamic and structural analysis. Monthly Weather Review, 148, 3605–3630 (2020). doi:10.1175/MWR-D-19-0303.1
  92. Wrzesien, M. L., S. V. Kumar, C. Vuyovich, E. D. Gutmann, R. S. Kim, B. A. Forman, M. Durand, M. Raleigh, R. Webb, and P. Houser. Development of a 'nature run' for observation system simulation experiments (OSSE) for snow mission development. American GeophysicalUnion Annual Meeting, San Francisco, California, United States, 2020.
  93. Wu, Qiong Wu, Zhen Zhang, Tianzhou Ma, James Waltz, Donald Milton, Shuo Chen. Link predictions for incomplete network data with outcome misclassification. Stat Med. 2021 Mar 15;40(6):1519-1534. doi:10.1002/sim.8856
  94. Xiao Zhang, Hong‐Yi Li, L. Ruby Leung, Lu Liu, Mohamad I. Hejazi, Barton A. Forman, and Wondmagegn Yigzaw. River regulation alleviates the impacts of climate change on US thermoelectricity production. Journal of Geophysical Research 125(4)2 2020. doi:10.1029/2019JD031618
  95. Xiaona Li, Qin Ni, Xiuxiu He, Jun Kong, Soon-Mi Lim, Garegin A Papoian, Jerome P Trzeciakowski, Andreea Trache, Yi Jiang. Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry. PLOS Comp Biol; 2020, 16 (6), e1007693. doi:10.1371/journal.pcbi.1007693
  96. Xizheng Wang, Zhenqian Pang, Chaoji Chen, Qinqin Xia, Yubing Zhou, Shuangshuang Jing, Ruiliu Wang, Upamanyu Ray, Wentao Gan, Claire Li, Gegu Chen, Bob Foster, Teng Li, and Liangbing Hu. All-Natural, Degradable, Rolled-Up Straws Based on Cellulose Micro-and Nano-Hybrid Fibers. Advanced Functional Materials, 30, 22 (2020). doi:10.1002/adfm.201910417
  97. Xu, Bin, Ludovic Troian-Gautier, Ryan Dykstra, Robert T. Martin, Osvaldo Gutierrez, and Uttam K. Tambar. Photocatalyzed Diastereoselective Isomerization of Cinnamyl Chlorides to Cyclopropanes. J. Am. Chem. Soc. 2020, 142, 13, 6206–6215. doi:10.1021/jacs.0c00147
  98. Yalun Yu and Jeffery B. Klauda. Update of the CHARMM36 United Atom Chain Model for Hydrocarbons and Phospholipids. Journal of Physical Chemistry B. 124: 6797-6812 (2020). doi:10.1021/acs.jpcb.0c04795
  99. Yihang Wang and Pratyush Tiwary. Understanding the role of predictive time delay and biased propagator in RAVE. J. Chem. Phys. 152, 144102 (2020). doi:10.1063/5.0004838
  100. Yihang Wang, João Marceo Lamim Ribeiro, Pratyush Tiwary. Machine learning approaches for analyzing and enhancing molecular dynamics simulations. Curr. Op. Struc. Bio. 61, 139-145 (2020). doi:10.1016/j.sbi.2019.12.016
  101. Yin, G., B. A. Forman, and J. Wang. Exploration of terrestrial water storage charac-terization via assimilation of ground-based GPS observations of vertical displacement ana dGRACE TWS retrievals. GRACE Science Team Meeting, Potsdam, Germany, 2020.
  102. Yin, G., B. A. Forman, and J. Wang. Exploration of terrestrial water storage characterization via assimilation of ground-based GPS observations of vertical displacement and GRACE TWS retrievals. GRACE Science Team Meeting, Potsdam, Germany, 2020.
  103. Yin, Gaohong, Barton A. Forman, Bryant D. Loomis, and Scott B. Luthcke. Comparison of Vertical Sur-face Deformation Estimates Derived from Space-based Gravimetry, Ground-based GPS, andModel-based Hydrologic Loading over Snow-dominated Watersheds in the United States. Fourth Paradigm Institute (CSIR-4PI), Bangalore, India, 2020.
  104. Yin, Gaohong, Barton A. Forman, Bryant D. Loomis, and Scott B. Luthcke. Comparison of vertical surface deformation estimates derived from space-based gravimetry, ground-based GPS, and model-based hydrologic loading over snow-dominated watersheds in the United States. Journal of Geophysical Research - Solid Earth 125(8) 2020. doi:10.1029/2020JB019432
  105. Yin, Gaohong, Barton A. Forman, Jing Wang. Assimilation of ground-based GPS observations of vertical displacement into a land surface model to improve terrestrial water storage estimates. Water Resources Research, 56, e2020WR028763. doi:10.1029/2020WR028763, 2020.5.
  106. Ying Bai, José A. Carrillo, Yaokun Li, Yanghua He & Jiuzhou Song. Diet-induced the change of mtDNA copy number and metabolism in Angus cattle. J Anim Sci Biotechnol. 2020 Jul 21;11:84. doi:10.1186/s40104-020-00482-x
  107. Yunsheng Liu, Shuo Wang, Adelaide M. Nolan, Chen Ling, Yifei Mo. Tailoring the Cation Lattice for Chloride Lithium-Ion Conductors. Advanced Energy Materials, 10, 2002356 (2020). doi:10.1002/aenm.202002356
  108. Zachary Smith, Pavan Ravindra, Yihang Wang, Rory Cooley, and Pratyush Tiwary. Discovering Protein Conformational Flexibility through Artificial-Intelligence-Aided Molecular Dynamics. J. Phys. Chem. B 2020, 124, 38, 8221-8229. doi:10.1021/acs.jpcb.0c03985
  109. Zhang, Cheng, Qisheng Zuo, Man Wang, Hao Chen, Nana He, Jing Jin, Tingting Li, Jingyi Jiang, Xia Yuan, Jiancheng Li, Xiang Shi, Ming Zhang, Hao Bai, Yang Zhang, Qi Xu, Hengmi Cui, Guobin Chang, Jiuzhou Song, Hongyan Sun, Yani Zhang, Guohong Chen, and Bichun Li. Narrow H3K4me2 is required for chicken PGC formation.. J Cell Physiol. 2021 Feb;236(2):1391-1400. doi:10.1002/jcp.29945
  110. Zhantao Liu, Tatiana Zinkevich, Sylvio Indris, Xingfeng He, Jue Liu, Wenqian Xu, Jianming Bai, Shan Xiong, Yifei Mo, and Hailong Chen. Li15P4S16Cl3, a Lithium Chlorothiophosphate as a Solid-State Ionic Conductor. Inorganic Chemistry, 59, 226-234 (2020). doi:10.1021/acs.inorgchem.9b01751
  111. Zhennan Huang, Yonggang Yao, Zhenqian Pang, Yifei Yuan, Tangyuan Li, Kun He, Xiaobing Hu, Jian Cheng, Wentao Yao, Yuzi Liu, Anmin Nie, Soroosh Sharifi-Asl, Meng Cheng, Boao Song, Khalil Amine, Jun Lu, Teng Li, Liangbing Hu & Reza Shahbazian-Yassar. Direct observation of the formation and stabilization of metallic nanoparticles on carbon supports. Nature Communications volume 11, Article number: 6373 (2020). doi:10.1038/s41467-020-20084-5
  112. Zhining Tao, Hao He, Chao Sun, Daniel Tong and Xin-Zhong Liang. Impact of Fire Emissions on U.S. Air Quality from 1997 to 2016–A Modeling Study in the Satellite Era. Remote Sens. 2020, 12(6), 913. doi:10.3390/rs12060913
  113. Zhou, Tianci, Shenglong Xu, Xiao Chen, Andrew Guo, and Brian Swingle. Operator Lévy Flight: Light Cones in Chaotic Long-Range Interacting Systems. Phys Rev Lett. 124, 180601 (2020). doi:10.1103/PhysRevLett.124.180601
  114. Zhu, Dr. Yizhou and Prof. Yifei Mo. Materials Design Principles for Air-Stable Lithium/Sodium Solid Electrolytes. Angewandte Chemie Int. Ed. 59, 17472-17476 (2020). doi:10.1002/anie.202007621
  115. Zhu, Feng, Md Shafiqul Islam, Lin Zhou, Zhenqi Gu, Ting Liu, Xinchao Wang, Jun Luo, Ce-Wen Nan, Yifei Mo and Cheng Ma. Single-atom-layer traps in a solid electrolyte for lithium batteries. Nature Communications 11, 1828 (2020). doi:10.1038/s41467-020-15544-x

2019

  1. Abhilash Sahoo, Hongcheng Xu and Silvina Matysiak. Pathways of amyloid-beta absorption and aggregation in membranous environments. Phys. Chem. Chem. Phys., 2019, 21, 8559-8568 (2019). doi:10.1039/C9CP00040B
  2. Adelaide M. Nolan, Yunsheng Liu, Yifei Mo. Solid-State Chemistries Stable with High-Energy Cathodes for Lithium-Ion Batteries. ACS Energy Lett. 2019, 4, XXX, 2444-2451. doi:10.1021/acsenergylett.9b01703
  3. Alexandre M. Sorlin, Jason C. Mixdorf, Madeline E. Rotella, Robert T. Martin, Osvaldo Gutierrez, and Hien M. Nguyen. The Role of Trichloroacetimidate To Enable Iridium-Catalyzed Regio- and Enantioselective Allylic Fluorination: A Combined Experimental and Computational Study. J. Am. Chem. Soc. 2019, 141, 37, 14843–14852. doi:10.1021/jacs.9b07575
  4. Alison N. Leonard , Eric Wang, Viviana Monje-Galvan, and Jeffery B. Klauda. Developing and Testing of Lipid Force Fields with Applications to Modeling Cellular Membranes.. Chem. Rev. 119, 9, 6227-6269 (2019). doi:10.1021/acs.chemrev.8b00384
  5. Alison N. Leonard, Jeffery B. Klauda, and Sergei Sukharev. Isothermal Titration Calorimetry of Be2+ with Phosphatidylserine Models Guides All-Atom Force Field Development for Lipid-Ion Interactions.. J. Phys. Chem. B. 123, 7, 1554-1565 (2019). doi:10.1021/acs.jpcb.8b11884
  6. Andy Fox, Upamanyu Ray, Teng Li. Strength of graphene grain boundaries under arbitrary in-plane tension. Carbon 142, 388-400 (2019).. doi:10.1016/j.carbon.2018.10.065
  7. Andy Fox, Upamanyu Ray, and Teng Li. Thermal conductivity of graphene grain boundaries along arbitrary in-plane directions: A comprehensive molecular dynamics study. Journal of Applied Physics 125, 015101 (2019).. doi:10.1063/1.5059561
  8. Aravind Chandrasekaran, Arpita Upadhyaya, Garegin A. Papoian. Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling. PLoS Comp Bio; 2019, 10.1371/journal.pcbi.1007156. doi:10.1371/journal.pcbi.1007156
  9. Austin Virtue, Xiuquan Zhou, Brandon Wilfong, Jeffrey W. Lynn, Keith Taddei, Peter Zavalij, Limin Wang, and Efrain E. Rodriguez. Magnetic order effects on the electronic structure of K M MnS 2 ( M = Cu , Li ) with the ThCr 2 Si 2 -type structure.. Physical Review Materials. 3. 044411 (2019). doi:10.1103/PhysRevMaterials.3.044411
  10. Bai, Hao, Yanghua He Yi Ding, José A. Carrillo, Ramesh K. Selvaraj, Huanmin Zhang, Jilan Chen, and Jiuzhou Song. Allele-Specific Expression of CD4+ T Cells in Response to Marek’s Disease Virus Infection. Genes 2019, 10(9), 718. doi:10.3390/genes10090718
  11. Bai, Y He, Y Ding, S Chang, H Zhang, J Chen, J Song. Parent-of-origin has no detectable effect on survival days of Marek's disease virus infected White Leghorns. Poult Sci. 2019 98(10) 4498-4503. doi:10.3382/ps/pez209
  12. Ballouz, R.-L., Walsh, K.J., Richardson, D.C., Michel, P.. Using a geometrical algorithm to provide N-body initial conditions for the gravitational phasa of asteroid family formation.. Monthly Notices of the Royal Astronomical Society, 485, 697. 2019. doi:10.1093/mnras/stz410
  13. Bryant D. Loomis, Alexandra S. Richey, Anthony A. Arendt, Ravi Appana, Y.-J. C. Deweese, Bart A. Forman, Sujay V. Kumar, Terence J. Sabaka and David E. Shean. Water storage trends in High Mountain Asia. Frontiers in Earth Science, 2019. doi: 10.3389/feart.2019.00235
  14. Bumseok Lee, Yong Su Jung, Dylan Jude, James Baeder. Prediction of Rotor Hub Flow Using Mercury Framework. 75th Annual Forum Proceedings of the Vertical Flight Society, Philadelphia, PA, May 18-21, (2019).
  15. Bumseok Lee, Yong Su Jung, Dylan Jude, James D. Baeder. Turbulent Transition Prediction of PSP Hovering Rotor Using γ-(〖Re〗_θt ) ̅-SA with Crossflow Transition Model. AIAA Scitech 2019 Forum, San Diego, CA, January 7-11, (2019). doi:10.2514/6.2019-0286
  16. C. Zhang, A. Collin, P. Moireau, A. Trouvé, M. C. Rochoux. Front shape similarity measure for data-driven simulations of wildland fire spread based on state estimation: application to the RxCADRE field-scale experiment. Proc. Combust. Inst., 37:4201-4209. (2019). doi:10.1016/j.proci.2018.07.112
  17. Chong-Chong He, Massimo Ricotti, Sam Geen. Simulating star clusters across cosmic time - I. Initial mass function, star formation rates, and efficiencies. Monthly Notices of the Royal Astronomical Society 489, 1880–1898 (2019). doi:10.1093/mnras/stz2239
  18. Chu, Qin, Yi Ding, Wentao Cai, Lei Liu, Huanmin Zhang, Jiuzhou Song. Marek’s Disease Virus Infection Induced Mitochondria Changes in Chickens. Int. J. Mol. Sci. 2019, 20(13), 3150. doi:10.3390/ijms20133150
  19. Cong Zhang, Annabelle Collin, Philippe Moireau, Arnaud Trouvé, Mélanie C. Rochoux. State-parameter estimation approach for data-driven wildland fire spread modeling: application to the 2012 RxCADRE S5 field-scale experiment. Fire Safety J., 105:286-299 (2019). doi:10.1016/j.firesaf.2019.03.009
  20. Da-Lin Zhang, Menglin S. Jin, Yixuan Shou, and Chunqing Dong. The influences of urban building complexes on the ambient flows over the Washington-Reston region. Journal of Applied Meteorology and Climatology, 58, 1325-1336 (2019). doi:10.1175/JAMC-D-19-0037.1
  21. Debabrata Pramanik, Zachary Smith, Adam Kells, and Pratyush Tiwary. Can One Trust Kinetic and Thermodynamic Observables from Biased Metadynamics Simulations?: Detailed Quantitative Benchmarks on Millimolar Drug Fragment Dissociation. J. Phys. Chem. B 2019, 123, 17, 3672-3678. doi:10.1021/acs.jpcb.9b01813
  22. Dr. Guanjin Wang, Dr. Amir Riaz and Dr Balakumar Balachandran. Continuum Modeling of Legged Locomotion Interaction with Granular Substrate. Presentation at Engineering Mechanics Institute Conference 2019.
  23. Eric Wang and Jeffery B. Klauda. Molecular Structure of the Long Periodicity Phase in the Stratum Corneum.. J. Amer. Chem. Soc. 141, 42, 16930-16943 (2019). doi:10.1021/jacs.9b08995
  24. Eric Wang and Jeffery B. Klauda. Structure and Permeability of Ceramide Bilayers and Multilayers. J. Phys. Chem. B. 123, 11, 2525-2535 (2019). doi:10.1021/acs.jpcb.9b00037
  25. Eviatar Bach, Safa Motesharrei, Eugenia Kalnay, Alfredo Ruiz-Barradas. Local Atmosphere-Ocean Predictability: Dynamical Origins, Lead Times, and Seasonality. J. Climate 32 pp 7507-7519. 2019.. doi:10.1175/JCLI-D-18-0817.1
  26. Fang L, Zhou Y, Liu S, Jiang J, Bickhart DM, Null DJ, Li B, Schroeder SG, Rosen BD, Cole JB, Van Tassell CP, Ma L, Liu G. Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits. Epigenetics 14, no. 3 (2019). doi:10.1080/15592294.2019.1582217
  27. Gopal, Abishek & Volpiani, Pedro & Yellapantula, Shashank & Larsson, Johan. Numerical investigation of real gas effects in premixed methane-oxygen flames at cryogenic conditions. 11th US National Combustion Meeting, Pasadena, CA, 2019.
  28. He, Yanghua, Bo Han, Yi Ding, Huanmin Zhang, Shuang Chang, Li Zhang, Chunfang Zhao, Ning Yang and Jiuzhou Song. Linc-GALMD1 Regulates Viral Gene Expression in the Chicken. Front Genet. 2019 Nov 14;10:1122. doi:10.3389/fgene.2019.01122
  29. Holdren, Scott, Roman Tsyshevsky, Kenan Fears, Jeffrey Owrutsky, Tao Wu, Xizheng Wang, Bryan W. Eichhorn, Maija M. Kuklja, and Michael R. Zachariah. Adsorption and Destruction of the G-Series Nerve Agent Simulant Dimethyl Methylphosphonate on Zinc Oxide. ACS Catal. 9 (2019) 902-911.. doi:10.1021/acscatal.8b02999
  30. Hoyoung D. Kang and Massimo Ricotti. Ghostly haloes in dwarf galaxies: constraints on the star formation efficiency before reionization. Monthly Notices of the Royal Astronomical Society 488: 2673–2688 (2019). doi:10.1093/mnras/stz1886
  31. Jawairia A. Ahmad, Barton A. Forman and Yonghwan Kwon. Analyzing machine learning predictions of passive microwave brightness temperatures over snow-covered terrain. Frontiers in Earth Science, 7:212 (2019). doi:10.3389/feart.2019.00212
  32. Jing Tao, Randal D. Koster, Rolf H. Reichle, Barton A. Forman, Yuan Xue, Richard H. Chen, and Mahta Moghaddam. Permafrost variability over the Northern Hemisphere based on the MERRA-2 reanalysis. Cryosphere, 13, 2087-2110 (2019). doi:0.5194/tc-13-2087-2019
  33. Joseph V. DeMartini, Derek C. Richardson, Olivier S. Barnouin, Nicholas C. Schmerr, Jeffrey B. Plescia, Petr Scheirich, Petr Pravecc. Using a discrete element method to investigate seismic response and spin change of 99942 Apophis during its 2029 tidal encounter with Earth. Icarus, 328, 93-103. doi:10.1016/j.icarus.2019.03.015
  34. João Marcelo Lamim Ribeiro, Pratyush Tiwary. Toward Achieving Efficient and Accurate Ligand-Protein Unbinding with Deep Learning and Molecular Dynamics through RAVE. J. Chem. Theory Comput., 2019, 15 (1), pp 708-719. doi:10.1021/acs.jctc.8b00869
  35. Jude, Dylan. Advancing the Multi-Solver Paradigm for Overset CFD Toward Heterogeneous Architectures. Doctoral Dissertation, Department of Aerospace Engineering, University of Maryland, 2019..
  36. Jung, Yong Su. Hamiltonian Paths and Strands for Unified Grid Approach for Computing Aerodynamic Flows. Doctoral Dissertation, Department of Aerospace Engineering, University of Maryland, 2019..
  37. Kenneth Duru, Kali L Allison, Maxime Rivet, Eric M Dunham. Dynamic rupture and earthquake sequence simulations using the wave equation in second-order form. Geophysical Journal International, Volume 219, Issue 2, November 2019, Pages 796-815. doi:https://doi.org/10.1093/gji/ggz319
  38. Kyle D. Wildermuth, Viviana Monje-Galvan, Linnea M. Warburton, and Jeffery B. Klauda. Effect of membrane lipid packing on stable binding of the ALPS peptide. Journal of Chemical Theory and Computation. 15, 1418-1429 (2019). doi:10.1021/acs.jctc.8b00945
  39. L. Fang, J. Jiang, G.E. Liu, L. Ma. Multi-Tissue Transcriptome Enhances GWAS Interpretation and Genomic Prediction in Cattle. Abstract and Oral presentation, International Plant & Animal Genome XXVI Conference, San Diego, CA, USA, January 12-16, 2019.
  40. Le VM, Marchand A, Verma S, Xu R, White J, Marshall AW, Rogaume T, Richard F, Luche J, Trouve A. Simulations of a turbulent line fire with a steady flamelet combustion model coupled with models for non-local and local gas radiation effects. Fire Safety J., 106:105-113, 2019.. doi:10.1016/j.firesaf.2019.04.011
  41. Leela Sai Praveen Gopisetti, Bora Cetin, Barton A. Forman, Stephan Durham, Charles W. Schwartz and Halil Ceylan. Evaluation of four different climate sources on Pavement mechanistic-empirical design and impact of surface shortwave radiation. International Journal of Pavement Engineering, pp1-14 (2019). doi: 10.1080/10298436.2019.1665180
  42. Lei Liu, Wes Lee, Jun Zhou, Surjo Bandyopadhyay, Osvaldo Gutierrez. Radical-clock α-halo-esters as mechanistic probes for bisphosphine iron-catalyzed cross-coupling reactions. Tetrahedron, Volume 75, Issue 2, 11 January 2019, Pages 129-136. doi:10.1016/j.tet.2018.11.043
  43. Liang, X.Z., C. Sun, X. Zheng, Y. Dai, M. Xu, H.I. Choi, T. Ling, F. Qiao, X. Kong, X. Bi, L. Song, and F. Wang. CWRF performance at downscaling China climate characteristics. Climate Dynamics, 52(3), 2159-2184. 2019. doi:10.1007/s00382-018-4257-5
  44. Lu Liu, Mohamad Hejazi, Gokul Iyer & Barton A. Forman. Implications of water constraints on electricity capacity expansion in the United States. Nature Sustainability (2019). doi:10.1038/s41893-019-0235-0
  45. M. C. Miller, F. K. Lamb, A. J. Dittmann, S. Bogdanov, Z. Arzoumanian, K. C. Gendreau, S. Guillot, A. K. Harding, W. C. G. Ho, J. M. Lattimer, R. M. Ludlam, S. Mahmoodifar, S. M. Morsink, P. S. Ray, T. E. Strohmayer, K. S. Wood, T. Enoto, R. Foster, T. Okajima, G. Prigozhin, and Y. Soong. PSR J0030+0451 Mass and Radius from NICER Data and Implications for the Properties of Neutron Star Matter. The Astrophysical Journal Letters,887:L24(28pp), 2019. doi:10.3847/2041-8213/ab50c5
  46. Massimiliano Bonomi, Giovanni Bussi, Carlo Camilloni, Pratyush Tiwary, et al. Promoting transparency and reproducibility in enhanced molecular simulations. Nature Methods 16, 670-673 (2019). doi:10.1038/s41592-019-0506-8
  47. Michel, P., Barnouin, O.S., Ballouz, R.-L., Walsh, K.J., Richardson, D.C., et al.. Disruption and Reaccumulation as the Possible Origin of Ryugu and Bennu Top Shapes.. Lunar and Planetary Science Conference #50. 2019..
  48. Miller, W., and D.-L. Zhang. A three-dimensional trajectory model with advection correction for tropical cyclones: Algorithm description and tests for accuracy.. Monthly Weather Review, 147, 3145-3167. 2019. doi:10.1175/MWR-D-18-0434.1
  49. Miller, W., and D.-L. Zhang. Understanding the unusual looping track of Hurricane Joaquin (2015) and its forecast errors.. Monthly Weather Review, 147, 2231-2259. 2019. doi:10.1175/MWR-D-18-0331.1
  50. P. Wang, Y.F. Li, L.N. Wang, J. Klos, Z.W. Peng, N. Kim, H. Bluhm, K.J. Gaskell, S.B. Lee, B. Eichhorn, Y.H. Wang. Probing the Electrical Double Layer by in situ X-ray Photoelectron Spectroscopy through a Carbon Nanotube-Strengthened Graphene Window. AVS 66th International Symposium & Exhibition, October 20-25, 2019. Columbus, OH.
  51. Parth Rakesh Desai, Yanbin Wang, Harnoor Singh Sachar, Haoyuan Jing, Shayandev Sinha, and Siddhartha Das. Supersolvophobic Soft Wetting: Nanoscale Elastocapillarity, Adhesion, and Retention of a Drop Behaving as a Nanoparticle. Matter. 1: 1262-1273 (2019). doi:10.1016/j.matt.2019.07.001
  52. Passe, Bernadine. Computational Aeroacoustics of Different Propeller Configurations for eVTOL Applications. MS Dissertation, Department of Aerospace Engineering, University of Maryland, 2019.. doi:10.13016/mbc5-oq8t
  53. Petermann, Jannik; Jung, Yong Su; Baeder, James; Rauleder, Jürgen. Validation of Higher-Order Interactional Aerodynamics Simulations on Full Helicopter Configuration. Journal of the American Helicopter Society, Vol. 64, No. 4, pp. 1-13, 2019. doi:10.4050/JAHS.64.042002
  54. Prof. Balakumar Balachandran. Model free prediction of nonlinear dynamics. Keynote Lecture, DINAME 2019.
  55. Qin Ni, Garegin A. Papoian. Turnover versus treadmilling in actin network assembly and remodeling. Cytoskeleton. 2019; 76: 562--570. doi:10.1002/cm.21564
  56. Richard R. Thompson, Madeline E. Rotella, Pu Du, Xin Zhou, Frank R. Fronczek, Revati Kumar, Osvaldo Gutierrez, and Semin Lee. Siloxide Podand Ligand as a Scaffold for Molybdenum-Catalyzed Alkyne Metathesis and Isolation of a Dynamic Metallatetrahedrane Intermediate. Organometallics 2019, 38, 21, 4054–4059. doi:10.1021/acs.organomet.9b00430
  57. S. G. Penny, E. Bach, K. Bhargava, C.-C. Chang, C. Da, L. Sun, T. Yoshida. Strongly Coupled Data Assimilation in Multiscale Media: Experiments Using a Quasi-Geostrophic Coupled Model. Journal of Advances in Modeling Earth Systems, 11, 1803-1829 (2019). doi:10.1029/2019MS001652
  58. Sanghyun Hong, Pietro Frigo, Yiḡitcan Kaya, Cristiano Giuffrida, Tudor Dumitraș. Terminal Brain Damage: Exposing the Graceless Degradation in Deep Neural Networks Under Hardware Fault Attacks. 28th USENIX Security Symposium (USENIX Security 19). ISBN:978-1-939133-06-9.
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  60. Shan Xiong, Xingfeng He, Aijie Han, Zhantao Liu, Brian McElhenny, Adelaide M Nolan, Shuo Chen, Yifei Mo, Hailong Chen. Computation Guided Design of LiTaSiO5, a New Lithium Ionic Conductor with Sphene Structure. Advanced Energy Materials, Vol 9, Issue 22, 1803821 (2019). doi:10.1002/aenm.201803821
  61. Shawn G. Rosofsky, Roman Gold, Cecilia Chirenti, E. A. Huerta, and M. Coleman Miller. Probing neutron star structure viaf-mode oscillations and dampingin dynamical spacetime models. Phys. Rev. D99,084024 (2019). doi:10.1103/PhysRevD.99.084024
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  71. Trotochaud, Lena, Ashley R. Head, Christin Büchner,Yi Yu, Osman Karslıoğlu, Roman Tsyshevsky, Scott Holdren, Bryan Eichhorn, Maija M.Kuklja, Hendrik Bluhm. Room Temperature Decomposition of Dimethyl Methylphosphonate on Cuprous Oxide Yields Atomic Phosphorus. Surf. Sci. 680 (2019) 75-87. doi:10.1016/j.susc.2018.10.003
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  74. Verma, S., Ahmed, M. and Trouvé, A.. The structure of line fires at flame scale. in Wildland Fire Dynamics (S. Goodrick and K. Speer, Eds.) Cambrige Univ. Press.
  75. Wang, G., Riaz, A. & Balachandran, B.. Smooth particle hydrodynamics studies of wet granular column collapses. Acta Geotech. (2019).. doi:10.1007/s11440-019-00828-4
  76. Wang, R.. Data-Driven Studies of Transient Events and Aperiodic Motions. PhD Dissertation, University of Maryland, 2019.. doi:10.13016/fge0-glb4
  77. Wang, R., Kalnay, E. & Balachandran, B.. Neural machine-based forecasting of chaotic dynamics. Nonlinear Dyn (2019).. doi:10.1007/s11071-019-05127-x
  78. Weiwei Ping, Chunpeng Yang, Yinhua Bao, Chengwei Wang, Hua Xie, Emily Hitz, Jian Cheng, Teng Li, Liangbing Hu. A silicon anode for garnet-based all-solid-state batteries: Interfacesand nanomechanics.. Energy Storage Materials Volume 21, 23019 Pages 246-252. doi:10.1016/j.ensm.2019.06.024
  79. Wes Lee, Mingbin Yuan, Christopher Acha, Ashley Onwu and Osvaldo Gutierrez. Mechanism of nitrones and allenoates cascade reactions for the synthesis of dihydro[1,2-a]indoles. Org. Biomol. Chem., 2019,17, 1767-1772. doi:10.1039/c8ob02346h
  80. Xin Liu, Da‐Lin Zhang, and Jian Guan. Parameterizing sea surface temperature cooling induced by tropical cyclones: 2. Verification by ocean drifters. Journal of Geophysical Research: Oceans, 124, 1232-1243 (2019). doi:10.1029/2018JC014117
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  82. Xingfeng He, Qiang Bai, Yunsheng Liu, Adelaide M. Nolan, Chen Ling, Yifei Mo. Crystal Structural Framework of Lithium Super-Ionic Conductors. Advanced Energy Materials, 9, 1902078 (2019). doi:10.1002/aenm.201902078
  83. Xin‐Zhong Liang, Qi Li, Haixia Mei, Mingjian Zeng. Multi‐grid nesting ability to represent convections across the gray zone.. Journal of Advances in Modeling Earth Systems, 11(12), pp.4352-4376 (2019). doi:10.1029/2019MS001741
  84. Xiulin Fan, Xiao Ji, Long Chen, Ji Chen, Tao Deng, Fudong Han, Jie Yue, Nan Piao, Ruixing Wang, Xiuquan Zhou, Xuezhang Xiao, Lixin Chen & Chunsheng Wang. All-temperature batteries enabled by fluorinated electrolytes with non-polar solvents. Nature Energy 4, no. 10 (2019): 882-890. doi:0.1038/s41560-019-0474-3
  85. Y. Wang, J.M. Ribeiro and P. Tiwary. Past-future information bottleneck for sampling molecular reaction coordinate simultaneously with thermodynamics and kinetics. Nature communications, 10(1), p.1–8 (2019).. doi:10.1038/s41467-019-11405-4
  86. Yanan Chen, Yanbin Wang, Shuze Zhu, Chaoji Chen, Valencia A. Danner, Yiju Li, Jiaqi Dai, Hongbian Li, Kun Kevin Fu, Teng Li, Yang Liu, and Liangbing Hu. One-Step, Catalyst-Free, Scalable in situ Synthesis of Single-Crystal Aluminum Nanowires in Confined Graphene Space. ACS Appl. Mater. Interfaces, 2019, 11 (6), pp 6009–6014. doi:10.1021/acsami.8b18977
  87. Yang, Seung. Drag and Noise Reduction of Flatback Airfoil by Spanwise Wavy Trailing Edge. Doctoral Dissertation, Department of Aerospace Engineering, University of Maryland, 2019.. doi:10.13016/z2f2-iysh
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  89. Yao Liu, Qiang Bai, Adelaide M. Nolan, Yong-Ning Zhou, Yonggang Wang, Yifei Mo, Yongyao Xia. Lithium Ion Storage in Lithium Titanium Germanate. Nano Energy Volume 66, December 2019, 104094. doi:10.1016/j.nanoen.2019.104094
  90. Yeosang Yoon, Sujay V. Kumar, Barton A. Forman, Benjamin F. Zaitchik, Yonghwan Kwon, Yun Qian, Summer Rupper, Viviana Maggioni, Paul Houser, Dalia Kirschbaum, Alexandra Richey, Anthony Arendt, David Mocko, Jossy Jacob, Soumendra Bhanja and Abhijit Mukherjee. Evaluating the uncertainty of precipitation and terrestrial water budget components over High Mountain Asia. Frontiers in Earth Science,24 May 2019. doi:10.3389/feart.2019.00120, 2019.
  91. Ying Zhang, Xingfeng He, Zhiqian Chen, Qiang Bai, Adelaide M Nolan, Charles A. Roberts, Debasish Banerjee, Tomoya Matsunaga, Yifei Mo, Chen Ling. Unsupervised Discovery of Solid-State Lithium Ion Conductors.. Nature Communications, 10, 5260 (2019). doi:10.1038/s41467-019-13214-1
  92. Yong Su Jung and James Baeder. γ−Reθt¯ Spalart–Allmaras with Crossflow Transition Model Using Hamilton-Strand Approach. Journal of Aircraft, Vol. 56, No. 3, pp. 1040-1055, (2019). doi:10.2514/1.C035149
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  94. Yonggang Yao, Zhennan Huang, Pengfei Xie, Lianping Wu, Lu Ma, Tangyuan Li, Zhenqian Pang, Miaolun Jiao, Zhiqiang Liang, Jinlong Gao, Yang He, Dylan Jacob Kline, Michael R. Zachariah, Chongmin Wang, Jun Lu, Tianpin Wu, Teng Li, Chao Wang, Reza Shahbazian-Yassar & Liangbing Hu. High temperature shockwave stabilized single atoms.. Nature Nanotechnology 14, 851-857 (2019). doi:10.1038/s41565-019-0518-7
  95. Yonghwan Kwon, Barton A. Forman, Jawairia A. Ahmad, Sujay V. Kumar, and Yeosang Yoon. Exploring the utility of machine learning-based passive microwave brightness temperature assimilation over terrestrial snow in High Mountain Asia. Remote Sensing, 11(19);2265 (2019). doi: 10.3390/rs11192265, 2019.
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2018

  1. Ahmad, J. and B. A. Forman. Support vector machine predictions of passive microwave brightness temperatures over snow-covered terrain in High Mountain Asia: What are the sensitivities and potential pitfalls of machine learning?. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  2. Ahmad, J., Y. Kwon, S. Kumar, and B. A. Forman. Integrating machine learning and brightness temperature assimilation to improve snow estimates over High Mountain Asia. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  3. Alison N. Leonard, Andrew C. Simmonett, Frank C. Pickard, IV, Jing Huang, Richard M. Venable, Jeffery B. Klauda, Bernard R. Brooks, and Richard W. Pastor. Comparison of Additive and Polarizable Models with Explicit Treatment of Long-Range Lennard-Jones Interactions Using Alkane Simulations. Journal of Chemical Theory Computation. 14, 948-958 (2018). doi:10.1021/acs.jctc.7b00948
  4. Alison N. Leonard, Richard W. Pastor, and Jeffery B. Klauda. Parameterization of the CHARMM All-Atom Force Field for Ether Lipids and Model Linear Ethers. Journal of Physical Chemistry B. 122, 6744-6754 (2018). doi:10.1021/acs.jpcb.8b02743
  5. Ally Toure, Rolf Reichle, B. Forman, Augusto Getirana, Gabriëlle De Lannoy. Assimilation of MODIS Snow Cover Fraction Observations into the NASA Catchment Land Surface Model. Remote Sensing. 10. 316. 1(2018). doi:10.3390/rs10020316
  6. Ashley R Head, Roman Tsyshevsky, Lena Trotochaud, Yi Yu, Osman Karslolu, Bryan Eichhorn, Maija M Kuklja and Hendrik Bluhm. Dimethyl methylphosphonate adsorption and decomposition on MoO2 as studied by ambient pressure x-ray photoelectron spectroscopy and DFT calculations. 2018 J. Phys.: Condens. Matter 30 134005. doi:10.1088/1361-648X/aab192
  7. Ashley R. Head, Lena Trotochaud, Roman Tsyshevsky, Kenan Fears, Bryan Eichhorn, Maija M. Kuklja and Hendrik Bluhm. Coupling Ambient Pressure X-ray Photoelectron Spectroscopy with Density Functional Theory to Study Complex Surface Chemistry and Catalysis. Topics in Catalysis 61 (2018) 2175-2184. doi:10.1007/s11244-018-1062-7
  8. B. A. Forman, Y. Kwon, S. Kumar, Y. Yoon, J. Le Moigne, M. Holland, and S. Nag. Global Snow from Space: Development of a Satellite-based, Terrestrial Snow Mission Planning Tool. NASA Earth Science Technology Forum, Silver Spring, Maryland, United States, 2018.
  9. B. A. Forman, Y. Kwon, S. Kumar, Y. Yoon, J. Le Moigne, M. Holland, and S. Nag. Global snow from space: Development of a satellite-based, terrestrial snow mission planning tool. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  10. Blake Hartley, Massimo Ricotti. ARC: adaptive ray-tracing with CUDA, a new ray tracing code for parallel GPUs. Monthly Notices of the Royal Astronomical Society, Volume 483, Issue 2, February 2019, Pages 1582-1598. doi:10.1093/mnras/sty2753
  11. Bora Cetin, Barton A. Forman; Charles W. Schwartz, and Brian Ruppelt. Performance of different climate data sources in mechanistic-empirical pavement distress analyses. ASCE Journal of Transportation Engineering, Part B: Pavements, 144(1), 1--18, 2018. doi:10.1061/JPEODX.0000019
  12. Brandon Wilfong, Xiuquan Zhou, Hector Vivanco, Daniel J. Campbell, Kefeng Wang, Dave Graf, Johnpierre Paglione, and Efrain Rodriguez. Frustrated magnetism in the tetragonal CoSe analog of superconducting FeSe. Phys. Rev. B 97, 104408 Published 8 March 2018. doi:10.1103/PhysRevB.97.104408
  13. Brown A, Bruns M, Gollner M, Hewson J, Maragkos G, Marshall A, McDermott R, Merci B, Rogaume T, Stoliarov S, Torero J, Trouve A, Wang Y, Weckman E. Proceedings of the first workshop organized by the IAFSS working group on measurement and computation of fire phenomena (MaCFP). Fire Safety J., 101:1-17, 2018.. doi:10.1016/j.firesaf.2018.08.009
  14. Chao Sun, X. Z. Liang. Using CWRF Multi-physics Ensemble to Improve Extreme Precipitation Prediction. AGU Fall Meeting. 2018.
  15. Chaoji Chen, Yanan Chen, Shuze Zhu, Jiaqi Dai, Glenn Pastel, Yonggang Yao, Dapeng Liu, Yanbin Wang, Jiayu Wan, Teng Li, Wei Luo and Liangbing Hu. Catalyst-Free In Situ Carbon Nanotube Growth in Confined Space via High Temperature Gradient. Research, vol. 2018, Article ID 1793784, 9 pages, 2018.. doi:10.1155/2018/17937840.
  16. Chen Zhang, Man Wang, Nana He, Mahmoud F Ahmed, Yilin Wang, Ruifeng Zhao, Xinjian Yu, Jing Jin, Jiuzhou Song, Qisheng Zuo, Yani Zhang, Bichun Li. Hsd3b2 Associated in Modulating Steroid Hormone Synthesis Pathway Regulates the Differentiation of Chicken Embryonic Stem Cells into Spermatogonial Stem cells. J Cell Biochem 2018 Jan;119(1):1111-1121. doi: 10.1002/jcb.26279
  17. Chenlu He, Gregory Custer, Jingheng Wang, Silvina Matysiak, and Dorothy Beckett. Superrepression through Altered Corepressor-Activated ProteinProtein Interactions. Biochemistry, 57, 1119-1129 (2018). doi:10.1021/acs.biochem.7b01122
  18. Chugang Mei, Hongcheng Wang, Qijun Liao, Lizhong Wang, Gong Cheng, Hongbao Wang, Chunping Zhao, Shancen Zhao, Jiuzhou Song, Xuanmin Guang, George E Liu, Anning Li, Xueli Wu, Chongzhi Wang, Xiaodong Fang, Xin Zhao, Stephen B Smith, Wucai Yang, Wanqiang Tian, Linsheng Gui, Yingying Zhang, Rodney A Hill, Zhongliang Jiang, Yaping Xin, Cunling Jia, Xiuzhu Sun, Shuhui Wang, Huanming Yang, Jian Wang, Wenjuan Zhu, Linsen Zan. Genetic architecture and selection of Chinese cattle revealed by whole genome resequencing. Mol Biol Evol 2018 Mar 1;35(3):688-699. doi:10.1093/molbev/msx322.
  19. Cooley, K., and Baeder, J.. A Central Compact-Reconstruction WENO Method for Hyperbolic Conservation Laws. 2018 AIAA Aerospace Sciences Meeting, AIAA SciTech Forum, (AIAA 2018-0067). doi:10.2514/6.2018-0067
  20. Cooley, Kilian. Central Compact-Reconstruction WENO Methods. PhD Dissertation, Department of Aerospace Engineering, University of Maryland, 2018.. doi:10.13016/qwkt-jjhm
  21. Dr. Jennifer K. Matsui, Dr. Álvaro Gutiérrez-Bonet, Madeline Rotella, Dr.Rauful Alam, Prof. Osvaldo Gutierrez, Prof. Gary A. Molander. Photoredox/Nickel-Catalyzed Single-Electron Tsuji-Trost Reaction: Development and Mechanistic Insights. Angewandte Chemie, Vol. 130 Iss. 48, 2018, 16073-16077. doi:10.1002/ange.201809919
  22. Eric Wang and Jeffery B. Klauda. Models for the Stratum Corneum Lipid Matrix: Effects of Ceramide Concentration, Ceramide Hydroxylation, and Free Fatty Acid Protonation. Journal of Physical Chemistry B. 122, 11996-12008 (2018). doi:10.1021/acs.jpcb.8b06188
  23. Eric Wang and Jeffery B. Klauda. Simulations of Pure Ceramide and Ternary Lipid Mixtures as Simple Interior Stratum Corneum Models. Journal of Physical Chemistry B. 122, 2757-2768 (2018). doi:10.1021/acs.jpcb.8b00348
  24. Fangli Liu, James R. Garrison, Dong-Ling Deng, Zhe-Xuan Gong, and Alexey V. Gorshkov. Asymmetric Particle Transport and Light-Cone Dynamics Induced by Anyonic Statistics. Phys. Rev. Lett. 121, 250404. doi:10.1103/PhysRevLett.121.250404
  25. Florian Thuillet, Patrick Michel, Clara Maurel, Ronald-Louis Ballouz, Yun Zhang, Derek C. Richardson, Jens Biele, Eri Tatsumi, Seiji Sugita. Numerical modeling of lander interaction with a low-gravity asteroid regolith surface. Application to MASCOT on board Hayabusa2. Astron. Astrophys., 615, A41. doi:10.1051/0004-6361/201832779
  26. Girotto, M., M. Rodell, R. H. Reichle, V. Maggioni, and B. A. Forman. Data assimilation of terrestrial water storage to adjust precipitation fluxes. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  27. Girotto, M., R. H. Reichle, G. J. M. De Lannoy, M. Rodell, Q. Liu, S. Mahanama, and B. A. Forman. Multi-sensor Assimilation of SMOS Brightness Temperature and GRACE Terrestrial Water Storage Observations for Soil Moisture and Shallow Groundwater Estimation. GRACE Science Team Meeting, Potsdam, Germany, 2018.
  28. Gregory S. Custer, Hongcheng Xu, Silvina Matysiak, and Payel Das. How hydrophobic hydration destabilizes surfactant micelle at low temperature: A coarse-grained simulation study. Langmuir , 34, 12590-12599 (2018). doi:10.1021/acs.langmuir.8b01994
  29. Hao He, Xin-Zhong Liang, Donald J. Wuebbles. Effects of emissions change, climate change and long-range transport on regional modeling of future U.S. particulate matter pollution and speciation. Atmospheric Environment Volume 179, April 2018, Pages 166-176. doi:10.1016/j.atmosenv.2018.02.020
  30. Hao Wu, Peter G. Wolynes, and Garegin A. Papoian. AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins. The Journal of Physical Chemistry B; 2018, 10.1021/acs.jpcb.8b05791. doi:10.1021/acs.jpcb.8b05791
  31. He, Y.; SUN, C.; Liang, X. Z.; Jaiswal, D.; Long, S.. A coupled modeling system for studying the impacts of growing biofuel crops in marginal lands on the food-energy-water nexus. AGU Fall Meeting. 2018.
  32. Iii, L & Li, Yaokun & Ding, Yi & Liu, Jianan & Reading, Benjamin & Fuller, Adam & Song, Jiuzhou. DNA methylation profiles correlated to striped bass sperm fertility. BMC genomics. 19. 244. doi:10.1186/s12864-018-4548-6
  33. Indrani Bera and Jeffery B. Klauda. Structural events in a bacterial uniporter leading to translocation of glucose to the cytosol. Journal of Molecular Biology. 430, 3337-3352 (2018). doi:10.1016/j.jmb.2018.06.021
  34. J. E. Komianos and G. A. Papoian. Stochastic Ratcheting on a Funneled Energy Landscape Is Necessary for Highly Efficient Contractility of Actomyosin Force Dipoles. Phys Rev X; 2018, 10.1103/PhysRevX.8.021006. doi:10.1103/PhysRevX.8.021006
  35. Jacob Bringewatt, William Dorland, Stephen P. Jordan, and Alan Mink. Diffusion Monte Carlo approach versus adiabatic computation for local Hamiltonians. Phys. Rev. A 97, 022323 Published 15 February 2018. doi:10.1103/PhysRevA.97.022323
  36. Jain, N.. Assessment of Turbulence Length Scales in Hybrid RANS-LES Methods. Doctoral Dissertation, Department of Aerospace Engineering, University of Maryland, 2018. doi:10.13016/M2RJ48W6C
  37. Jiang, R.; Liang, X. Z.; Sun, C.. Evaluation of Planetary Boundary Layer Parameterizations for U.S. Climate Simulation. AGU Fall Meeting. 2018.
  38. João Marcelo Lamim Ribeiro, Pablo Bravo, Yihang Wang, and Pratyush Tiwary. Reweighted autoencoded variational Bayes for enhanced sampling (RAVE). J. Chem. Phys. 149, 072301 (2018). doi:10.1063/1.5025487
  39. João Marcelo Lamim Ribeiro, Sun-Ting Tsai, Debabrata Pramanik, and Yihang Wang, Pratyush Tiwary. Kinetics of Ligand-Protein Dissociation from All-Atom Simulations: Are We There Yet?. Biochemistr 201a, 58, 3, 156-165. doi:10.1021/acs.biochem.8b00977
  40. Jude, D., Lee, B., Jung, Y. S., Petermann, J., Govindarajan, B., and Baeder, J.. Application of a Heterogeneous CFD Framework Towards Simulating Complete Rotorcraft Configurations. 74th Annual Forum of the American Helicopter Society, Phoenix, Arizona, May 14-17, 2018.
  41. Keith B. Sutyak, Wes Lee, Dr. Peter V. Zavalij, Prof. Osvaldo Gutierrez, Prof. Jeffery T. Davis. Templating and Catalyzing [2+2] Photocycloaddition in Solution Using a Dynamic G‐Quadruplex. Angewandte Chemie, Vol. 57 Iss. 52, 2018, 17146-17150. doi:10.1002/anie.201811202
  42. Kwon, Y., B. A. Forman, Y. Yoon, and S. Kumar. Feasibility of a microwave brightness temperature data assimilation framework using the NASA Land Information System and a well-trained support vector machine to improve snow water equivalent estimates over High Mountain Asia. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  43. Kwon, Y., Y. Yoon, L. Wang, B. A. Forman, and S. Kumar. Synthetic study of space- borne LiDAR snow depth retrieval assimilation within the NASA Land Information System. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  44. Lei Liu, Wes Lee, Mingbin Yuan & Osvaldo Gutierrez. Mechanisms of Bisphosphine Iron-Catalyzed C(SP2)-C(SP3) Cross-Coupling Reactions: Inner-Sphere or Outer-Sphere Arylation?. Comments on Inorganic Chemistry, 38:6, 210-237. doi:10.1080/02603594.2018.1539392
  45. Lidiya Gavrilenko and Jeffery B. Klauda. Aggregation of Modified Hexabenzocoronenes as Models for early-stage Asphaltene Self-Assembly. Molecular Simulation. 44, 992-1003 (2018). doi:10.1080/08927022.2018.1469752
  46. Lingyang Xu, Yanghua He, Yi Ding, George E. Liu, Huanmin Zhang, Hans H. Cheng, Robert L. Taylor Jr. and Jiuzhou Song. Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek’s disease. J. Anim. Sci. and Biotech. 9:65 (2018). doi:10.1186/s40104-018-0281-x
  47. Liu, L., S. Parkinson, M. Gidden, E. Byers, Y. Satoh, K. Riahi, and B. A. Forman. Quantifying impacts of climate change and competing land-use on the potential for reservoirs to secure surface water yields in the world's largest river basins. Environmental Research Letters, 13(4), 2018. doi:10.1088/1748-9326/aab2b5/meta
  48. Loomis, B., S. Richey, S. Kumar, B. A. Forman, A. Arendt, R. Appana, S. B. Luthcke, and T. J. Sabaka. Comparison and validation of High Mountain Asia land surface and groundwater storage models using GRACE mascon resolution operators. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  49. Lu, Y., Ballouz, R.-L., Richardson, D.C.. Exploring Shear Free Ringlet Formation with Direct Simulations of Saturn's B rings.. Astronomical Journal, 156, 129. 2018. doi:10.3847/1538-3881/aad688
  50. Mark Adams, Eric Wang, Xiaohong Zhuang, and Jeffery B. Klauda. Simulations of Simple Bovine and Homo sapiens Outer Cortex Ocular Lens Membrane Models with a Majority Concentration of Cholesterol. Biochimica et Biophysica Acta-Biomembranes. 1860: 2134-2144 (2018). doi:10.1016/j.bbamem.2017.11.010
  51. María Jesús Cabrera-Afonso, Zhi-Peng Lu, Christopher B. Kelly, Simon B. Lang, Ryan Dykstra, Osvaldo Gutierrez and Gary A. Molander. Engaging sulfinate salts via Ni/photoredox dual catalysis enables facile Csp2SO2R coupling. Chem. Sci., 2018,9, 3186-3191. doi:10.1039/c7sc05402e
  52. May JP, Yuan X, Sawicki E, Simon AE. RNA virus evasion of nonsense-mediated decay.. PLoS Pathog 14(11): e1007459. doi:10.1371/journal.ppat.1007459
  53. Nannan Qin and Da-Lin Zhang. On the extraordinary intensification of Hurricane Patricia (2015). Part I: Numerical experiments. Weather and Forecasting, 33: 1205-1224 (2018). doi:10.1175/WAF-D-18-0045.1
  54. Nicholas B. Guros, Arvind K. Balijepalli, Jeffery B. Klauda. The Role of Lipid Interactions in Accurate Simulations of the alpha-hemolysin Transporter. Biophysical Journal. 115, 1720-1730 (2018). doi:10.1016/j.bpj.2018.09.009
  55. Nolan, A.M.,Zhu, Y.,He, X.,Bai, Q.,Mo, Y.. Computation-Accelerated Design of Materials and Interfaces for All-Solid-State Lithium-Ion Batteries. Joule, 20 Sept 2018. doi:10.1016/j.joule.2018.08.017
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  57. Park, J., Y. Kwon and B. A. Forman. Prediction of C-band SAR backscatter over snow-covered terrain using machine learning. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  58. Parth Rakesh Desai and Siddhartha Das. Lubrication in Polymer-brush Bilayers in the Weak Interpenetration Regime: Molecular Dynamics Simulations and Scaling Theories. Physical Review E. 98: 022503 (2018). doi:10.1103/PhysRevE.98.022503
  59. Payel Das, Silvina Matysiak, and Jeetain Mittal. Looking at the disordered proteins through the computational microscope. ACS Central Science, 4, 534-542 (2018). doi:10.1021/acscentsci.7b00626
  60. Pedro S. Volpiani, Matteo Bernardini, and Johan Larsson. Effects of a nonadiabatic wall on supersonic shock/boundary-layer interactions. Phys. Rev. Fluids 3, 083401. doi:10.1103/PhysRevFluids.3.083401
  61. Phelan, James P.; Lang, Simon B.; Compton, Jordan S.; Kelly, Christopher B.; Dykstra, Ryan; Gutierrez, Osvaldo; Molander, Gary A.. Redox-Neutral Photocatalytic Cyclopropanation via Radical/Polar Crossover.. J. Am. Chem. Soc., 2018, 140 (25), pp 8037-8047. doi:10.1021/jacs.8b05243
  62. Pouyan Khakbaz and Jeffery B.Klauda. Investigation of Phase Transitions of Saturated Phosphocholine Lipid Bilayers via Molecular Dynamics Simulations. Biochimica et Biophysica Acta-Biomembranes. 1860, 1489-1501 (2018). doi:10.1016/j.bbamem.2018.04.014
  63. Pratyush Tiwary. Designing dynamical maps for biomolecules with statistical mechanics & predictive artificial intelligence. Workshop on free energy methods, kinetics and markov state models in drug design at Novartis Institutes for Biomedical Research, Boston.
  64. Pratyush Tiwary. Identifying and enhancing important fluctuations in complex systems with Maximum Caliber and Metadynamics. Exploring and quantifying rough free energy landscapes at International School of Statistical Physics, Erice, Sicily, Italy.
  65. Pratyush Tiwary. Water in Drug Unbinding: Actor, Director or Sidekick? Insights from Predictive All-Atom Simulations. Gordon Research Conference on Water and Aqueous Solutions, New Hampshire.
  66. Qiang Bai, Xingfeng He, Yizhou Zhu, and Yifei Mo. First Principles Study of Oxyhydride H- Ion Conductors: Toward Facile Anion Conduction in Oxide-Based Materials. ACS Applied Energy Materials, 1(4), 1626-1634 (2018). doi:10.1021/acsaem.8b00077
  67. Qiang Bai, Yizhou Zhu, Xingfeng He, Eric Wachsman and Yifei Mo. First Principles Hybrid Functional Study of Small Polarons in Doped SrCeO3 Perovskite: Towards Computation Design of Materials with Tailored Polaron. Ionics, 24(4), 1139-1151 (2018). doi:10.1007/s11581-017-2268-6
  68. Qin, Nannan & Zhang, Da-Lin & Miller, William & Kieu, Chanh. On the rapid intensification of Hurricane Wilma (2005). Part IV: Inner-core dynamics during the steady RMW stage. Quarterly Journal of the Royal Meteorological Society, 144, 2508-2523 (2018). doi:10.1002/qj.3339
  69. Qisheng Zuo, Kai Jin, Jiuzhou Song, Yani Zhang, Guohong Chen & Bichun Li. Interaction of the primordial germ cell-specific protein C2EIP with PTCH2 directs differentiation of embryonic stem cells via HH signaling activation. Cell Death & Disease Vol. 9, Article number: 497 (2018). doi:10.1038/s41419-
  70. Ragul Gowthaman and Brian G Pierce. TCRmodel: high resolution modeling of T cell receptors from sequence. Nucleic Acids Res. 2018 Jul 2; 46(Web Server issue): W396-W401.. doi:10.1093/nar/gky432
  71. Ryan, E., L. Brucker, and B. A. Forman. Exploration into the potential linkage between local fluctuations in passive microwave snow water equivalent (SWE) retrieval and various characteristics of a rain-on-snow (ROS) event. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  72. Sun, Lei, X. Z. Liang, M. Xu, T. Ling, and X. Lee. Evaluation of a multilevel turbulence closure model for shallow lakes against other models.. AGU Fall Meeting. 2018.
  73. Tao, J., R. H. Reichle, R. Koster, B. A. Forman, and Y. Xue. Impacts of vegetation and snowfall on permafrost variability. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  74. Tao, J., R. H. Reichle, R. Koster, B. A. Forman, and Y. Xue. Permafrost variability over the Northern Hemisphere based on the MERRA-2 reanalysis, American Geophysical Union Annual Meeting. Washington, D.C., United States, 2018.
  75. Taylor Myers, Arnaud Trouvé, Andre Marshall. Predicting sprinkler spray dispersion in FireFOAM. Fire Safety J., 100:93-102 (2018). doi:10.1016/j.firesaf.2018.07.008
  76. Viviana Monje-Galvan and Jeffery B. Klauda. Preferred binding mechanism of Osh4’s ALPS motif, insights from molecular dynamics. Journal of Physical Chemistry B. 122, 9713-9723 (2018). doi:10.1021/acs.jpcb.8b07067
  77. Volpiani, Pedro S., Matteo Bernardini, and Johan Larsson. Investigating the effects of non-adiabatic walls on shock/boundary-layer interaction at low Reynolds number using direct numerical simulations. 2018 AIAA Aerospace Sciences Meeting. 2018. doi:10.2514/6.2018-1806
  78. Wang, J., B. A. Forman, M. Girotto, and R. H. Reichle. Year-round Estimation of Terrestrial Water Storage over Snow-Covered Terrain via Multi-sensor Assimilation of GRACE and AMSR-E. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018..
  79. Wang, J., B. A. Forman, M. Girotto, and R. H. Reichle. Year-round estimation of terrestrial water storage in a snow-covered basin through the assimilation of multisensor satellite observations from GRACE and AMSR-E. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  80. Wang, J., M. Girotto, Y. Xue, R. H. Reichle, and B. A. Forman. Multivariate Data Assimilation Using GRACE and AMSR-E: A Synthetic Study of Snow and Terrestrial Water Storage in the Volga River Basin. GRACE Science Team Meeting, Potsdam, Germany, 2018.
  81. Wang, L., B. A. Forman, Kwon, Y., and S. Kumar. Integration of a Spatiotemporal Sub- sampler for Use in Observing System Simulation Experiments: Linking TAT-C with NASA LIS to Study Snow across Western Colorado. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  82. Wang, L., Kwon, Y. B. A. Forman, J. Le Moigne, S. Nag and S. Kumar. Towards synthetic passive microwave brightness temperature assimilation over snow-covered terrain in Western Colorado. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  83. Xiao Ji, Ji Chen, Fei Wang, Wei Sun, Yunjun Ruan, Ling Miao, Jianjun Jiang, and Chunsheng Wang. Water-activated VOPO4 for magnesium ion batteries. Nano letters 18, no. 10 (2018): 6441-6448. doi:10.1021/acs.nanolett.8b02854
  84. Xing Yuan, Peng Ji, Linying Wang, Xin‐Zhong Liang, Kun Yang, Aizhong Ye, Zhongbo Su, Jun Wen. High‐Resolution Land Surface Modeling of Hydrological Changes Over the Sanjiangyuan Region in the Eastern Tibetan Plateau: 1. Model Development and Evaluation. Journal of Advances in Modeling Earth Systems, 10, 2806–2828 (2018). doi:10.1029/2018MS001412
  85. Xingfeng He, Yizhou Zhu, Alexander Epstein, and Yifei Mo. Statistical Variances of Diffusional Properties from Ab Initio Molecular Dynamics Simulations. NPJ Computational Materials, 4, 18 (2018). doi:10.1038/s41524-018-0074-y
  86. Xiulin Fan, Enyuan Hu, Xiao Ji, Yizhou Zhu, Fudong Han, Sooyeon Hwang, Jue Liu, Seongmin Bak, Zhaohui Ma, Tao Gao, Sz-Chian Liou, Jianming Bai, Xiao-Qing Yang, Yifei Mo, Kang Xu, Dong Su & Chunsheng Wang. High energy-density and reversibility of iron fluoride cathode enabled via an intercalation-extrusion reaction. Nature Communications 9, Article number: 2324 (2018). doi:0.1038/s41467-018-04476-2
  87. Xiulin Fan, Enyuan Hu, Xiao Ji, Yizhou Zhu, Fudong Han, Sooyeon Hwang, Jue Liu, Seongmin Bak, Zhaohui Ma, Tao Gao, Sz-Chian Liou, Jianming Bai, Xiao-Qing Yang, Yifei Mo, Kang Xu, Dong Su and Chunsheng Wang. High energy-density and reversibility of iron fluoride cathode enabled via an intercalation-extrusion reaction. Nature communications 9, no. 1 (2018): 1-12. doi:10.1038/s41467-018-04476-2
  88. Xiulin Fan, Xiao Ji, Fudong Han, Jie Yue, Ji Chen, Long Chen, Tao Deng, Jianjun Jiang and Chunsheng Wang. Fluorinated solid electrolyte interphase enables highly reversible solid-state Li metal battery. Science Advances 4, no. 12 (2018): eaau9245. doi:10.1126/sciadv.aau9245
  89. Xuetian Ma, Adelaide Nolan, Shuo Zhang, Jianming Bai, Wenqian Xu, Lijun Wu, Yifei Mo, Hailong Chen. Guiding Synthesis of Polymorphs of Materials Using Nanometric Phase Diagrams. Journal of the American Chemical Society, 140, 17290-17296 (2018). doi:10.1021/jacs.8b11029
  90. Y. Mo. Computation Accelerated Design of Materials and Interfaces for Solid-State Batteries. 21st International Conference on Ternary and Multinary Compounds, Boulder, CO (09/2018) (Invited).
  91. Y. Mo. Design Principles for Solid Electrolyte–Electrode Interfaces in All-Solid-State Li-Ion Batteries : Insight from First-Principles Computation. MRS Fall meeting, Boston MA (11/2018), ET06.02.04, (Invited).
  92. Y. Mo. Understanding Fast Ion Diffusion in Super-Ionic Conductors and Computational Materials Design. MRS Fall meeting, Boston, MA (11/2018) (Invited).
  93. Ya Zhou, Dr. Hanjun Sun, Hongcheng Xu, Prof. Silvina Matysiak, Prof. Jinsong Ren, Prof. Xiaogang Qu. Mesoporous Encapsulated Chiral Nanogold for Use in Enantioselective Reactions. Angew. Chem. ,57, 16791-16795 (2018). doi:10.1002/anie.201811118
  94. Yalun Yu and Jeffery B Klauda. Modeling Pseudomonas Aeruginosa Inner Plasma Membrane in Planktonic and Biofilm Modes. Journal of Chemical Physics. 149, 215102 (2018).
  95. Yan Li, Eugenia Kalnay, Safa Motesharrei, Jorge Rivas, Fred Kucharski, Daniel Kirk-Davidoff, Eviatar Bach, Ning Zeng. Climate model shows large-scale wind and solar farms in the Sahara increase rain and vegetation. Science 07 Sep 2018: Vol. 361, Issue 6406, pp. 1019-1022. doi:10.1126/science.aar5629
  96. Yanan Chen, Yilin Wang, Shuze Zhu, Kun Fu, Xiaogang Han, Yanbin Wang, Bin Zhao, Tian Li, Boyang Liu , Yiju Li, Jiaqi Dai, Hua Xie, Teng Li, John W.Connell, Yi Lin, Liangbing Hu. Nanomanufacturing of graphene nanosheets through nano-hole opening and closing. Materials Today (2018).. doi:10.1016/j.mattod.2018.09.001
  97. Yang, S.J., and Baeder, J.. Blunt-Wavy Combined Trailing Edge for Wind Turbine Blade Inboard Performance Improvement. 2018 J. Phys.: Conf. Ser. 1037, 022004. doi:10.1088/1742-6596/1037/2/022004
  98. Yang, S.J., and Baeder, J.. Blunt-Wavy Combined Trailing Edge for Wind Turbine Blade Inboard Performance Improvement. The Science of Making Torque from Wind 2018, Milano, Italy, June 20-22, 2018.
  99. Yang, Seung Joon & Baeder, James. Aerodynamic and aeroacoustic behavior of span-wise wavy trailing edge modified SNL 100 m blade. Wind Engineering, Vol. 43, No. 1, pp. 4-25, 2018. doi:10.1177/0309524X18818646
  100. Yanghua He, Qisheng Zuo, John Edwards, Keji Zhao, Jinzhi Lei, Wentao Cai, Qing Nie, Bichun Li, Jiuzhou Song. DNA Methylation and Regulatory Elements during Chicken Germline Stem Cell Differentiation. Stem Cell Reports. 2018 Jun 5;10(6):1793-1806. doi:10.1016/j.stemcr.2018.03.018
  101. Yanjun Gan, Xin-Zhong Liang, Qingyun Duan, Aizhong Ye, Zhenhua Di, Yang Hong, Jianduo Li. A systematic assessment and reduction of parametric uncertainties for a distributed hydrological model. Journal of Hydrology Volume 564, September 2018, Pages 697-711. doi:10.1016/j.jhydrol.2018.07.055
  102. Yin, G., B. A. Forman, Loomis, B. D., and S. B. Luthcke. Estimating Snow Water Equivalent from a Combination of GPS and GRACE Observations over the Western United States. 75th Eastern Snow Conference, College Park, Maryland, United States, 2018.
  103. Yin, G., B. A. Forman, Loomis, B. D., and S. B. Luthcke. On the use of GPS to estimate terrestrial water storage variations in the Western United States: A comparison of seasonal hydrological loading inferred from GPS, GRACE, and the NASA Catchment Land Surface Model. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  104. Yong Su Jung and James D. Baeder. RetSA with Crossflow Transition Model using Hamiltonian-Strand Approach. 2018 AIAA SciTech Forum, Orlando, Florida, January 2018.
  105. Yong Wang, Omar Valsson, Pratyush Tiwary, Michele Parrinello, and Kresten Lindorff-Larsen. Frequency adaptive metadynamics for the calculation of rare-event kinetics. The Journal of chemical physics, 149(7), p.072309 (2018). doi:10.1063/1.5024679
  106. Yoon, Y., S. Kumar, Y. Kwon, B. A. Forman, and B. Zaitchik. Assessing the uncertainty in the terrestrial water budgets over High Mountain Asia. American Geophysical Union Annual Meeting, Washington, D.C., United States, 2018.
  107. Yuan Xue, Barton A. Forman, Rolf H. Reichle. Estimating Snow Mass in North America Through Assimilation of Advanced Microwave Scanning Radiometer Brightness Temperature Observations Using the Catchment Land Surface Model and Support Vector Machines. Water Resources Research, 54, Issue 9 (2018) 6488-6509. doi:10.1029/2017wr022219
  108. Yun Zhang, Derek C. Richardson, Olivier S. Barnouin, Patrick Michel, Stephen R. Schwartz, and Ronald-Louis Ballouz. Rotational Failure of Rubble-pile Bodies: Influences of Shear and Cohesive Strengths. Astrophys. J., 857, 15. (2018). doi:10.3847/1538-4357/aab5b2
  109. Zachary Smith, Debabrata Pramanik, Sun-Ting Tsai, and Pratyush Tiwary. Multi-dimensional spectral gap optimization of order parameters (SGOOP) through conditional probability factorization. J. Chem. Phys. 149, 234105 (2018). doi:10.1063/1.5064856

2017

  1. Andrei A. Novikov, Anton P. Semenov, Viviana Monje-Galvan, Vladimir N. Kuryakov, Jeffery B. Klauda, and Mikhail A. Anisimov. Dual Action of Hydrotropes at the Water/Oil Interface. Journal of Physical Chemistry C. 121, 16423-16431 (2017). doi:10.1021/acs.jpcc.7b05156
  2. Bo Han, Yanghua He, Li Zhang, Yi Ding, Ling Lian, Chunfang Zhao, Jiuzhou Song, Ning Yang. Long intergenic non-coding RNA GALMD3 in chicken Marek’s disease. Scientific Reports 7, 10294 (2017). doi:10.1038/s41598-017-10900-2
  3. Carlos Castillo, Soham De, Xintong Han, Bharat Singh, Abhay Kumar Yadav, and Tom Goldstein. Son of Zorn's Lemma: Targetted Style Transfer Using Instance-Aware Semantic Segmentation. ICASSP 2017 - 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). doi:10.1109/ICASSP.2017.7952376
  4. Clara Maurel, Ronald-Louis Ballouz, Derek C. Richardson, Patrick Michel, Stephen R. Schwartz. Numerical simulations of oscillation-driven regolith motion: Brazil-nut effect. Mon. Not. R. Astron. Soc., 464, 2866-2881 (2017). doi:10.1093/mnras/stw2641
  5. Cong Zhang, Mélanie Rochoux, Wei Tang, Michael Gollner, Jean-Baptiste Filippi, Arnaud Trouvé. Evaluation of a data-driven wildland fire spread forecast model with spatially-distributed parameter estimation in simulations of the FireFlux I field-scale experiment. Fire Safety J., 91:758-767 (2017). doi:10.1016/j.firesaf.2017.03.057
  6. Dianliang Deng, Hong-Bin Fang, Kian Razeghi Jahromi,Jiuzhou Song, and Ming Tan. Detection of Threshold Points for Gene Expressions under Multiple Biological Conditions. Statistics and Its Interface Volume 10 (2017) 643–655.
  7. Eric Link, Taylor Myers, Arnaud Trouvé, Andre Marshall. Measurements of spray-plume interactions for model validation. Fire Safety J., 91:714-722 (2017). doi:10.1016/j.firesaf.2017.04.024
  8. Eric Wang and Jeffery B. Klauda. Examination of Mixtures Containing Sphingomyelin and Cholesterol by Molecular Dynamics Simulations. Journal of Physical Chemistry B. 121, 4833-4844 (2017). doi:10.1021/acs.jpcb.7b01832
  9. Eric Wang and Jeffery B. Klauda. Molecular Dynamics Simulations of Ceramide and Ceramide-Phosphatidylcholine Bilayer Mixtures. Journal of Physical Chemistry B. 121, 10091-10104 (2017). doi:10.1021/acs.jpcb.7b08967
  10. Escobar, D., Sinotte, T., Oas, P., Lee, B., Mills, B., Jude, D., and Craig, W.. Elysium: 24 Hour Hovering Machine Conceptual Design. 24th Annual AHS International Student Design Competition, 2017.
  11. Fenggong Wang, Roman V. Tsyshevsky, Anton Zverev, Anatoly Mitrofanov, and Maija M. Kuklja. Can a photosensitive oxide catalyze decomposition of energetic materials?. J. Phys. Chem. C, 2017, 121 (2), pp 1153-1161. doi:10.1021/acs.jpcc.6b10127
  12. Fengxue Qiao and Xin-Zhong Liang. Effects of cumulus parameterization closures on simulations of summer precipitation over the continental United States. Clim Dyn 49, 225–247 (2017). doi:10.1007/s00382-016-3338-6
  13. Forman, B. A., S. Kumar, J. Le Moigne, and S. Nag. Towards the development of a global, satellite-based, terrestrial snow mission planning tool. 74th Eastern Snow Conference, Ottawa, Ontario, Canada, 2017.
  14. Gao, Xin. Whole genome shotgun sequencing revealed highly polymorphic genes in Escherichia coli O157:H7 collected from cattle fecal samples. 2nd ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines, October 2017, Washington D.C..
  15. Gao, Xin. Whole genome shotgun sequencing revealed highly polymorphic genes in Escherichia coli O157:H7 collected from cattle fecal samples. 7th Annual FDA foods and Veterinary Medicine Science and Research Conference, October 2017, College Park, Maryland.
  16. Gregory S. Custer, Payel Das, and Silvina Matysiak. Interplay between Conformational Heterogeneity and Hydration in the Folding Landscape of a Designed Three-Helix Bundle. J. Phys. Chem. B, 2017, 121, 2731-2738. doi:10.1021/acs.jpcb.6b12286
  17. Hongcheng Xu and Silvina Matysiak. Effect of pH on chitosan hydrogel polymer network structure. Chem. Comm., 13, 7373-7376 (2017). doi:10.1039/C7CC01826F
  18. Indrani Bera and Jeffery B. Klauda. Molecular Simulations of Mixed Lipid Bilayers with Sphingomyelin, Glycerophospholipids and Cholesterol. Journal of Physical Chemistry B. 121, 5197-5208 (2017). doi:10.1021/acs.jpcb.7b00359
  19. J. P. White, E. D. Link, A. Trouvé, P. B. Sunderland, A. W. Marshall. A general calorimetry framework for measurement of combustion efficiency in a suppressed turbulent line fire. Fire Safety J., 92:164-176 (2017). doi:10.1016/j.firesaf.2017.06.009
  20. J. P. White, S. Vilfayeau, A. W. Marshall, P. B. Sunderland, A. C. Trouvé, and R. J. McDermott. Modeling flame extinction and reignition in large eddy simulations with fast chemistry. Fire Safety J., 90:72-85 (2017). doi:10.1016/j.firesaf.2017.04.023
  21. James Cooper, Yi Ding, Jiuzhou Song, Keji Zhao. Genome-wide mapping of DNasehypersensitive sites in rare cell populations using single cell DNase sequencing. Nature Protocol 12(11):2342-2354 (2017). doi:10.1038/nprot.2017.099
  22. James P. White, Salman Verma, Elizabeth Keller, Ailing Hao, Arnaud Trouvé, André W. Marshall. Water mist suppression of a turbulent line fire. Fire Safety J., 91:705-713 (2017). doi:10.1016/j.firesaf.2017.03.014
  23. Jing Tao, Rolf H. Reichle, Randal D. Koster, Barton A. Forman, and Yuan Xue. Evaluation and enhancement of permafrost modeling with the NASA Catchment Land Surface Model. Journal of Advances in Modeling Earth Systems, 9, 7, pp2771-2795. doi:10.1002/2017MS001019
  24. Jingheng Wang, Gregory Custer, Dorothy Beckett, Silvina Matysiak. Long Distance Modulation of Disorder-to-Order Transitions in Protein Allostery. Biochemistry. 2017 Aug 29;56(34):4478-4488. doi:10.1021/acs.biochem.7b00496
  25. Jung Hoon Shin and Da-Lin Zhang. The impact of moist frontogenesis and tropopause undulation on the intensity, size and structural changes of Hurricane Sandy (2012). Journal of the Atmospheric Sciences, 74: 893-913 (2017). doi:10.1175/JAS-D-15-0362.1
  26. Jung, Y. S., Jude, D., Govindarajan, B., and Baeder, J.. Line-Based Unstructured/Strucutred Heterogenous CPU/GPU Framework for Complex Aerodynamic Flows. Proceedings of the 73rd Annual American Helicopter Society, Fort Worth, TX, May 9-11, 2017.
  27. Jung, Y. S., Jude, D., Govindarajan, B., and Baeder, J.. Wind Turbine Simulations Using CPU/GPU Heterogeneous Computing. 2017 NAWEA Symposium, Ames, Iowa, September 26-29, 2017.
  28. Kun Fu, Yunhui Gong, Boyang Liu, Yizhou Zhu, Shaomao Xu, Yonggang Yao, Wei Luo, Chengwei Wang, Steven D. Lacey, Jiaqi Dai, Yanan Chen, Yifei Mo, Eric D. Wachsman, Liangbing Hu. Toward garnet electrolyte-based Li metal batteries: An ultrathin, highly effective, artificial solid-state electrolyte/metallic Li interface. Science Advances Vol 3 Num 4 07 Apr 2017 : e1601659. doi:10.1126/sciadv.1601659
  29. Lena Trotochaud, Roman Tsyshevsky, Scott Holdren, Kenan Fears, Ashley R. Head, Yi Yu, Osman Karslolu, Sven Pletincx, Bryan Eichhorn, Jeffrey Owrutsky, Jeffrey Long, Michael Zachariah, Maija M. Kuklja, and Hendrik Bluhm. Spectroscopic and Computational Investigation of Room-Temperature Decomposition of a Chemical Warfare Agent Simulant on Polycrystalline Cupric Oxide. Chemistry of Materials 2017 29 (17), 7483-7496. doi:10.1021/acs.chemmater.7b02489
  30. Lingyang Xu, Ryan J Haasl, Jiajie Sun, Yang Zhou, Derek M Bickhart, Junya Li, Jiuzhou Song, Tad S Sonstegard, Curtis P Van Tassell, Harris A Lewin, George E Liu. Systematic profiling of short tandem repeats in the cattle genome. Genome Biol Evol 2017 Jan 1; 9 (1). doi: 10.1093/gbe/evw256
  31. Liu Guanzhou, Liang Xinzhong. Progress of the Climate Extension of Weather Research and Forecast(CWRF)Model Application in China. Advances in Earth Science 2017, Vol. 32 Issue (7): 781-787. doi:10.11867/j.issn.1001-8166.2017.07.0781
  32. Liu, L. , M. Hejazi, H. Li, B. A. Forman, and X. Zhang. Vulnerability of US thermoelectric power generation to climate change when incorporating state-level environmental regulations. Nature Energy volume 2, Article number: 17109 (2017). doi:10.1038/nenergy.2017.109
  33. Maija M. Kuklja, Onise Sharia, Roman Tsyshevsky. Manifestations of two-dimensional electron gas in molecular crystals. Surf. Sci. 657 (2017) pp20-27.
  34. Matthew A. Conte, William J. Gammerdinger, Kerry L. Bartie, David J. Penman, and Thomas D. Kocher. A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions. BMC Genomics 2017 18:341. doi:10.1186/s12864-017-3723-5
  35. Peng Ji, Xing Yuan, Xin‐Zhong Liang. Do Lateral Flows Matter for the Hyperresolution Land Surface Modeling?. Journal of Geophysical Research: Atmospheres, 122, 12,077– 12,092 (2017). doi:https://doi.org/10.1002/2017JD027366
  36. Peng Zhou, Xintong Han, Vlad I. Morariu and Larry S. Davis. Two-Stream Neural Networks for Tampered Face Detection. IEEE CVPR Workshop on Media Forensics, 2017. doi:10.1109/CVPRW.2017.229
  37. Pratyush Tiwary. Molecular Determinants and Bottlenecks in the Dissociation Dynamics of Biotin-Streptavidin. J. Phys. Chem. B, 2017, 121, 48, 10841-10849.. doi:10.1021/acs.jpcb.7b09510
  38. Qisheng Zuo, Kai Jin, Jiuzhou Song, Yani Zhang, Bichun Li. Cloning, expression pattern analysis, and subcellular localization of Capra hircus SCD1 gene with production of transgenic mice. J Cell Biochem. 2018 Feb;119(2):2240-2247. doi:10.1002/jcb.26386.
  39. Ronald-Louis Ballouz, Derek C. Richardson, and Ryuji Morishima. Numerical Simulations of Saturn’s B Ring: Granular Friction as a Mediator between Self-gravity Wakes and Viscous Overstability. Astron. J., 153, 146. (2017). doi:10.3847/1538-3881/AA60BE
  40. Ryan, E. , L. Brucker, and B. A. Forman. Sensitivity of Advanced Microwave Scanning Radiometer (AMSR-E) based snow water equivalent (SWE) retrievals to rain-on- Snow (ROS) events in polar regions. 74th Eastern Snow Conference, Ottawa, Ontario, Canada, 2017.
  41. S. Toosi and J. Larsson. Anisotropic grid-adaptation in large eddy simulations. Comp. & Fluids 156, 146-161, 2017. doi:10.1016/j.compfluid.2017.07.006
  42. S. Vilfayeau, T. Myers, A. W. Marshall, A. Trouvé. Large eddy simulation of suppression of turbulent line fires by base-injected water mist. Proc. Combust. Inst. 36:3287–3295 (2017). doi:10.1016/j.proci.2016.06.058
  43. Sai J. Ganesan, Hongcheng Xu, and Silvina Matysiak. Influence of Monovalent Cation Size on Nanodomain Formation in Anionic-Zwitterionic Mixed Bilayers. J. Phys. Chem. B, 2017, 121, 787-799. doi:10.1021/acs.jpcb.6b10099
  44. Venkataraman Santhanam, Vlad I. Morariu, and Larry S. Davis. Generalized Deep Image to Image Regression. The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) [Spotlight], July 2017.
  45. Viviana Monje-Galvan and Jeffery B. Klauda. Two sterols, two bilayers: insights on membrane structure from molecular dynamics. Molecular Simulation. 43, 1179-1188 (2017). doi:10.1080/08927022.2017.1353690:w
  46. W. S. Cole, K. W. Mahmud, J. D. Sau and I. B. Spielman. Phase transitions and emergent gauge potentials in strongly interacting spin-orbit coupled bosons. APS March Meeting 2017, abstract id. E13.010.
  47. Wei Luo, Yunhui Gong, Yizhou Zhu, Yiju Li, Yonggang Yao, Ying Zhang, Kun Fu, Glenn Pastel, Chuan-Fu Lin, Gary W. Rubloff, Yifei Mo, Eric D. Wachsman, Liangbing Hu. Reducing Interfacial Resistance between Garnet-Structured Solid-State Electrolyte and Li Metal Anode by a Germanium Layer. Adv. Mater. 2017, 29, 1606042. doi:10.1002/adma.201606042
  48. Wes Lee, Jun Zhou, and Osvaldo Gutierrez. Mechanism of Nakamuras Bisphosphine-Iron-Catalyzed Asymmetric C(sp2)C(sp3) Cross-Coupling Reaction: The Role of Spin in Controlling Arylation Pathways. J. Am. Chem. Soc., 2017, 139 (45), pp 16126-16133. doi:10.1021/jacs.7b06377
  49. Xiaogang Han, Yunhui Gong, Kun Fu, Xingfeng He, Gregory T. Hitz, Jiaqi Dai, Alex Pearse, Boyang Liu, Howard Wang, Gary Rubloff, Yifei Mo, Venkataraman Thangadurai, Eric D. Wachsman, Liangbing Hu. Negating Interfacial Impedance in Garnet-Based Solid-State Li-Metal Batteries. Nature Materials 16, 572-579 (2017). doi:10.1038/nmat4821
  50. Xiaohong Zhuang, Anna Ou, and Jeffery B Klauda. Simulations of simple Linoleic acid-containing Lipid Membranes and Models for the Soybean Plasma Membranes. Journal of Chemical Physics. 146, 215103 (2017). doi: 10.1063/1.4983655
  51. Xin-Zhong Liang, You Wu, Robert G. Chambers, Daniel L. Schmoldt, Wei Gao, Chaoshun Liu, Yan-An Liu, Chao Sun, and Jennifer A. Kennedy. Determining climate effects on US total agricultural productivity. PNAS March 21, 2017 114 (12) E2285-E2292. doi:10.1073/pnas.1615922114
  52. Xing-Nuo Li , Clark D Ridge, Eugene P Mazzola, Jianghao Sun, Osvaldo Gutierrez, Arvin Moser, Joseph C DiMartino, Scott A MacDonald, and Pei Chen. Application of a computer-assisted structure elucidation program for the structural determination of a new terpenoid aldehyde with an unusual skeleton. Magn Reson Chem. 2017 Mar;55(3):210-213. doi:10.1002/mrc.4466
  53. Xingfeng He, Yizhou Zhu, Yifei Mo. Origin of Fast Ion Diffusion in Super-Ionic Conductors. Nature communications, 8, 15893 (2017). doi:10.1038/ncomms15893
  54. Xintong Han, Bharat Singh, Vlad I. Morariu and Larry S. Davis. VRFP: On-the-fly Video Retrieval using Web Images and Fast Fisher Vector Products. IEEE Transactions on Multimedia Volume: 19, Issue: 7, July 2017. doi:10.1109/TMM.2017.2671414
  55. Xintong Han, Zuxuan Wu, Yu-Gang Jiang and Larry S. Davis. Learning Fashion Compatibility with Bidirectional LSTMs. Proceedings of the 2017 ACM on Multimedia Conference Pages 1078-1086. doi:10.1145/3123266.3123394
  56. Xiuquan Zhou and Efrain E. Rodriguez. Tetrahedral Transition Metal Chalcogenides as Functional Inorganic Materials. Chem. Mater., 2017, 29 (14), pp 5737-5752. doi:10.1021/acs.chemmater.7b01561
  57. Xu, Lingyang, Ryan J. Haasl, Jiajie Sun, Yang Zhou, Derek M. Bickhart, Junya Li, Jiuzhou Song, Tad S. Sonstegard, Curtis P. Van Tassell, Harris A. Lewin, George E. Liu. Systematic Profiling of Short Tandem Repeats in the Cattle Genome.. Genome Biol Evol. 2017 Jan 1;9(1):20-31. doi:10.1093/gbe/evw256
  58. Xu, Lingyang, Yanghua He, Yi Ding, Guirong Sun, Jose Adrian Carrillo, Yaokun Li, Mona M Ghaly, Li Ma, Huanmin Zhang, George E Liu, Jiuzhou Song. Characterization of copy number variation's potential role in Marek’s Disease. Int. J. Mol. Sci. 2017, 18(5), 1020. doi:10.3390/ijms18051020
  59. Xue, Y. and B. A. Forman. Integration of satellite-based passive microwave brightness temperatures using support vector machines and an ensemble-based land data assimilation framework in order to improve snow estimation in forested regions. IEEE Proceedings of the International Geoscience and Remote Sensing Symposium, Fort Worth, Texas, United States.
  60. Xue, Y. and B. A. Forman. Using a support vector machine and satellite-based passive microwave brightness temperature observations within a land data assimilation system to improve regional snow characterization. 74th Eastern Snow Conference, Ottawa, Ontario, Canada, 2017.
  61. Yang, S.J., and Baeder, J.. Aerodynamic and Aeroacoustic Behaviors of Spanwise Wavy Trailing Edge Modified SNL 100 meter Blade. 2017 NAWEA Symposium, Ames, Iowa, September 26-29, 2017.
  62. Yizhou Zhu, Xingfeng He, Yifei Mo. Strategies Based on Nitride Materials Chemistry to Stabilize Li Metal Anode. Advanced Science, 1600517 (2017). doi:10.1002/advs.201600517
  63. Yun Zhang, Derek C. Richardson, Olivier S. Barnouin, Clara Maurel, Patrick Michel, Stephen R. Schwartz, Ronald-Louis Ballouz, Lance A. M. Benner, Shantanu P. Naidu, Li Junfeng. Creep stability of the proposed AIDA mission target 65803 Didymos: I. Discrete cohesionless granular physics model. Icarus, 294, 98-123. doi:10.1016/j.icarus.2017.04.027
  64. Zaigao Tan, Pouyan Khakbaz, Yingxi Chen, Jeremy Lombardo, Jong Moon Yoon, Jacqueline V. Shanks, Jeffery B. Klauda, Laura R. Jarboe. Engineering Escherichia coli Membrane Phospholipid Head Distribution Improves Tolerance and Production of Biorenewables. Metabolic Engineering. 44, 1-12 (2017). doi:10.1016/j.ymben.2017.08.006

2016

  1. A. Trettel and J. Larsson. Mean velocity scaling for compressible wall turbulence with heat transfer. Phys. Fluids 28, 026102, 2016. doi:10.1063/1.4942022
  2. Ashley R. Head, Roman Tsyshevsky, Lena Trotochaud, Yi Yu, Line Kyhl, Osman Karslolu, Maija M. Kuklja, and Hendrik Bluhm. Adsorption of Dimethyl Methylphosphonate on MoO3: The Role of Oxygen Vacancies. J. Phys. Chem. C 120 (2016) pp29077-29088. doi:10.1021/acs.jpcc.6b07340
  3. B. Cao, K. W. Mahmud, M. Hafezi. Two coupled nonlinear cavities in a driven-dissipative environment. Phys. Rev. A 94, 063805 (2016). doi:10.1103/PhysRevA.94.063805
  4. Bharat Singh, Michael Jones, Tim Marks, Oncel Tuzel and Ming Shao. A Multi-Stream Bi-Directional Recurrent Neural Network for Fine-Grained Action Detection. 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR). doi:10.1109/CVPR.2016.216
  5. Bin Zhang. Assimilation of VIIRS and AVHRR SST L2 Products with the Chesapeake Bay Operational Forecasting System. CICS/UMD Annual Science Conference, UMD, 11/29/2016.
  6. Blake Hartley and Massimo Ricotti. Modelling reionization in a bursty universe. Monthly Notices of the Royal Astronomical Society 462, 1164–1179 (2016). doi:10.1093/mnras/stw1562
  7. Bo Han, Ling Lian, Xin Li, Chunfang Zhao, Lujiang Qu, Changjun Liu, Jiuzhou Song and Ning Yang. Chicken Chicken gga-miR-130a targets HOXA3 and MDFIC and inhibits Marek’s disease lymphoma cell proliferation and migration. Molecular Biology Reports volume 43, pages667–676(2016). doi:10.1007/s11033-016-4002-2
  8. Bo Han, Ling Lian, Xin Li, Chunfang Zhao, Lujiang Qu, Changjun Liu, Jiuzhou Song and Ning Yang. Chicken gga-miR-103-3p Targets CCNE1 and TFDP2 and Inhibits MDCC-MSB1 Cell Migration. G3: Genes, Genomes, Genetics May 1, 2016 vol. 6 no. 5 1277-1285. doi: 10.1534/g3.116.028498
  9. Christopher T. Boughter, Viviana Monje-Galvan, Wonpil Im, and Jeffery B. Klauda. Influence of Cholesterol on Phospholipid Bilayer Structure and Dynamics. Journal of Physical Chemistry B. 120, 11761-11772 (2016). doi:10.1021/acs.jpcb.6b08574
  10. Derek M Bickhart, Lingyang Xu, Jana L Hutchison, John B Cole, Daniel J Null, Steven G Schroeder, Jiuzhou Song, Jose Fernando Garcia, Tad S Sonstegard, Curtis P Van Tassell, Robert D Schnabel, Jeremy F Taylor, Harris A Lewin, George E Liu. Diversity and population-genetic properties of copy number variations and multicopy genes in cattle. DNA Research, Volume 23, Issue 3, June 2016, Pages 253-262. doi:10.1093/dnares/dsw013
  11. Fengxue Qiao and Xin‐Zhong Liang. Effects of cumulus parameterization closures on simulations of summer precipitation over the United States coastal oceans. Journal of Advances in Modeling Earth Systems 8 (2), 764-785 (2016). doi:10.1002/2015MS000621
  12. Forman, B. A., Y. Xue , and J. Wang. Multi-sensor assimilation for global snow: Towards a combined, radiometric and gravimetric data assimilation approach. American Geophysical Union, Fall General Assembly 2016, abstract id. H33H-1642.
  13. Fudong Han, Yizhou Zhu, Xingfeng He, Yifei Mo, Chunsheng Wang. Electrochemical Stability of Li10GeP2S12 and Li7La3Zr2O12 Solid Electrolytes. Advanced Energy Materials, 6, 1501590 (2016). doi:10.1002/aenm.201501590
  14. Haiqing Zhao, David Winogradoff, Minh Bui, Yamini Dalal, Garegin A Papoian. Promiscuous histone mis-assembly is actively prevented by chaperones. JACS; 2016, 10.1021/jacs.6b05355. doi:10.1021/jacs.6b05355
  15. Hao He, Xin-Zhong Liang, Hang Lei, Donald J. Wuebbles. Future U.S. ozone projections dependence on regional emissions, climate change, long-range transport and differences in modeling design. Atmospheric Environment Volume 128, March 2016, Pages 124-133. doi:10.1016/j.atmosenv.2015.12.064
  16. J. H. Pixley, Pallab Goswami, and S. Das Sarma. Disorder-driven itinerant quantum criticality of three-dimensional massless Dirac fermions. Phys. Rev. B 93, 085103 (2016). doi:10.1103/PhysRevB.93.085103
  17. Joseph Eugene Andrews, Shayandev Sinha, Peter W. Chunga and Siddhartha Das. Wetting Dynamics of a Water Nanodrop on Graphene. Physical Chemistry Chemical Physics. 18: 23482-23493 (2016). doi:10.1039/C6CP01936F
  18. José A. Carrillo, Yanghua He, Yaokun Li, Jianan Liu, Richard A. Erdman, Tad S. Sonstegard and Jiuzhou Song. Integrated metabolomic and transcriptome analyses reveal finishing forage affects metabolic pathways related to beef quality and animal welfare. Sci Rep 6:25948 (2016). doi:10.1038/srep25948
  19. Junli Du, Manlin Li, Zhifa Yuan, Mancai Guo, Jiuzhou Song, Xiaozhen Xie, and Yulin Chen. A decision analysis model for KEGG pathway analysis. BMC Bioinfromatics, 2016 17:407. doi:10.1186/s12859-016-1285-1
  20. K. W. Mahmud, R. Wilson, M. Foss-Feig, M. Hafezi. Driven-dissipative bosons in open boundary and inhomogeneous cavity arrays. APS March Meeting 2016, abstract id. B50.011.
  21. Kai He, Sen Zhang, Jing Li, Xiqian Yu, Qingping Meng, Yizhou Zhu, Enyuan Hu, Ke Sun, Hongseok Yun, Xiao-Qing Yang, Yimei Zhu, Hong Gan, Yifei Mo, Eric A. Stach, Christopher B. Murray, and Dong Sub. Visualizing Nonequilibrium Lithiation of Spinel Oxide via In Situ Transmission Electron Microscopy. Nature Communications, 7, 11441 (2016). doi:10.1038/ncomms11441
  22. Ke Fang and M. Coleman Miller. A New Method for Finding Point Sources in High-energy Neutrino Data. The Astrophysical Journal 826, 102 (2016). doi:10.3847/0004-637X/826/2/102
  23. Ke Fang, Kumiko Kotera, M. Coleman Miller, Kohta Murase, and Foteini Oikonomoue. Identifying ultrahigh-energy cosmic-ray accelerators with future ultrahigh-energy neutrino detectors. Journal of Cosmology and Astroparticle Physics 12(2017)017. doi:10.1088/1475-7516/2016/12/017
  24. Keck ZY, Wang Y, Lau P, Lund G, Rangarajan S, Fauvelle C, Liao GC, Holtsberg FW, Warfield KL, Aman MJ, Pierce BG, Fuerst TR, Bailey JR, Baumert TF, Mariuzza RA, Kneteman NM, Foung SK. Affinity maturation of a broadly neutralizing human monoclonal antibody that prevents acute hepatitis C virus infection in mice. Hepatology. 2016 Dec;64(6):1922-1933. doi:10.1002/hep.28850
  25. Konstantin Popov, James Komianos, Garegin A. Papoian. MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks. PLoS Comp Bio; 2016, doi:10.1371/journal.pcbi.1004877. doi:10.1371/journal.pcbi.1004877
  26. Ligang Chen, Xin-Zhong Liang, David DeWitt, Arthur N. Samel and Julian X. L. Wang. Simulation of seasonal US precipitation and temperature by the nested CWRF-ECHAM system. Climate Dynamics volume 46, pages879–896(2016). doi:10.1007/s00382-015-2619-9
  27. Lingyang Xu, Yali Hou, Derek M. Bickhart, Yang Zhou, El Hamidi abdel Hay, Jiuzhou Song, Tad S. Sonstegard, Curtis P. Van Tassell and George E. Liu. Population-genetic properties of differentiated copy number variations in cattle. Sci. Rep. 6, 23161 (2016). doi: 10.1038/srep23161
  28. Massimo Ricotti, Owen H. Parry, and Nickolay Y. Gnedin. A Common Origin for Globular Clusters and Ultra-faint Dwarfs in Simulations of the First Galaxies. The Astrophysical Journal 831 (2016).. doi:10.3847/0004-637X/831/2/204
  29. Maxmore Chaibva, Sudi Jawahery, Albert W Pilkington 4th, James R Arndt, Olivia Sarver, Stephen Valentine, Silvina Matysiak, Justin Legleiter. Acetylation within the first 17 amino acids of huntingtin exon 1 alters aggregation and binding to lipid membranes. Biophys. J., 2016, 111, 349-362. doi:10.1016/j.bpj.2016.06.018
  30. Michael Price, André Marshall and Arnaud Trouvé. A multi-observable approach to address the ill-posed nature of inverse fire modeling problems. Fire Technol. 52:1779-1797 (2016). doi:10.1007/s10694-015-0541-7
  31. Mo, YF. Accelerating Materials Design and Discovery using Computational Approaches. TechConnect World Innovation Conference, DC (05/2016) (Invited).
  32. Mo, YF. Critical Roles of Interface Engineering in All-Solid-State Li-Ion Batteries: Insights from First Principles Calculations. ECS meeting, San Diego, CA (05/2016) (Invited).
  33. Mo, YF. Design Solid Electrolyte with High Ionic Conductivity and Enhanced Stability using First Principles Computation. ACS Meeting, San Diego, CA (03/2016) (Invited).
  34. Mo, YF. Overcoming Materials Challenges in All-Solid-State Li-ion Batteries: Insights from Computational Modeling. TechConnect World Innovation Conference, DC (05/2016).
  35. Mo, YF. Towards Computational Design of Solid Interfaces using First Principles Computation - A Case Study in All-Solid-State Li-ion Battery. MRS Spring Meeting, Phoenix, AZ (03/2016).
  36. Mo, YF. Understanding Solid Interfaces in All-Solid-State Li-ion Batteries: Insights from First Principles Computation. ACS Meeting, San Diego, CA (03/2016) (Invited).
  37. Mo, YF. Understanding Solid Interfaces in All-Solid-State Li-ion Batteries: Insights from First Principles Computation. MRS Spring Meeting, Phoenix, AZ (03/2016).
  38. Nannan Qin, Da-Lin Zhang, and Ying Li. A statistical analysis of steady eyewall sizes associated with rapidly intensifying hurricanes. Weather and Forecasting, 31:737-742 (2016). doi:10.1175/WAF-D-16-0016.1
  39. Ning Ren, Yi Wang, Sébastien Vilfayeau, Arnaud Trouvé. Large eddy simulation of turbulent vertical wall fires supplied with gaseous fuel through porous burners. Combust. Flame 169:194-208. (2016). doi:10.1016/j.combustflame.2015.12.008
  40. Pongratz, C., Milke, J.A. and Trouvé, A.. A CFD study to identify methods to increase maximum velocity of makeup air for atrium smoke control, ST-16-(RP-1600). ASHRAE Transactions, 122:10-20 (2016).
  41. R. M. Wilson, K. W. Mahmud, A. Hu, A. V. Gorshkov, M. Hafezi, M. Foss-Feig. Collective phases of strongly interacting cavity photons. Phys. Rev. A 94, 033801 (2016). doi:10.1103/PhysRevA.94.033801
  42. Rachael Barton, Pouyan Khakbaz, Indrani Bera, Jeffery B. Klauda, M. Kathryn Iovine, and Bryan W. Berger. Interplay of specific trans- and juxtamembrane interfaces in Plexin A3 dimerization and signal transduction. Biochemistry. 55, 4928-4938 (2016). doi:10.1021/acs.biochem.6b00517
  43. Roman Tsyshevsky, Anton S. Zverev, Anatoly Y. Mitrofanov, Natalya N. Ilyakova, Mikhail V. Kostyanko, Sergey V. Luzgarev, Guzel G. Garifzianova, and Maija M. Kuklja. Role of Hydrogen Abstraction Reaction in Photocatalytic Decomposition of High Energy Density Materials. J. Phys. Chem. C 120 (2016) pp 24835-24846.
  44. S. Vilfayeau, J. P. White, P. B. Sunderland, A. W. Marshall, A. Trouvé. Large eddy simulation of flame extinction in a turbulent line fire exposed to air-nitrogen co-flow. Fire Safety J., 86:16–31. doi:10.1016/j.firesaf.2016.09.003
  45. Sai J. Ganesan, Hongcheng Xu and Silvina Matysiak. Effect of lipid head group interactions on membrane properties and membrane-induced cationic β-hairpin folding. Phys. Chem. Chem. Phys., 2016, 18, 17836-17850. doi:10.1039/C5CP07669B
  46. Sai J. Ganesana and Silvina Matysiak. Interplay between the hydrophobic effect and dipole interactions in peptide aggregation at interfaces. Phys. Chem. Chem. Phys., 2016, 18, 2449-2458. doi:10.1039/C5CP05867H
  47. Shuyan Liu, Julian X.L. Wang, Xin Zhong Liang, Vernon Morris. A hybrid approach to improving the skills of seasonal climate outlook at the regional scale. Climate Dynamics volume 46, pages483–494(2016). doi:10.1007/s00382-015-2594-1
  48. Stephen R. Schwartz, Yang Yu, Patrick Michel, Martin Jutzi. Small-body deflection techniques using spacecraft: techniques in simulating the fate of ejecta. Adv. Space Res., 57, 1832–1846 (2016). doi:10.1016/j.asr.2015.12.042
  49. Tao, J., R. H. Reichle, R. Koster, Y. Xue , and B. A. Forman. Improving thermodynamic representation in permafrost modeling within the NASA Catchment Land Surface Model. American Geophysical Union, Fall General Assembly 2016, abstract id. C22B-02.
  50. Viviana Monje-Galvana and Jeffery B.Klauda. Peripheral Membrane Proteins: Tying the Knot between Experiment and Computation. Biochimica et Biophysica Acta-Biomembranes. 1858, 1584-1593 (2016). doi:10.1016/j.bbamem.2016.02.018
  51. Wang, J. , B. A. Forman, and A. P. Davis. Probabilistic stormwater runoff and water quality modeling in urban Maryland. Journal of Hydrologic Engineering Vol. 23, Issue 2 (February 2018). doi:10.1061/(ASCE)HE.1943-5584.0001600
  52. Wei Luo, Yunhui Gong, Yizhou Zhu, Kun Kelvin Fu, Jiaqi Dai, Steven D. Lacey, Chengwei Wang, Boyang Liu, Xiaogang Han, Yifei Mo, Eric D. Wachsman, and Liangbing Hu. Transition from Super-lithiophobicity to Super-lithiophilicity of Garnet Solid-State Electrolyte. Journal of the American Chemical Society, 138, 12258–12262 (2016). doi:10.1021/jacs.6b06777
  53. Xiaohong Zhuang and Jeffery B.Klauda. Modeling Structural Transitions from the Periplasmic-open State of Lactose Permease and Interpretations of Spin Label Experiments. Biochimica et Biophysica Acta-Biomembranes. 1858, 1541-1552 (2016). doi:10.1016/j.bbamem.2016.04.008
  54. Xiaohong Zhuang, Eder M.Dávila-Contrera, Andrew H.Beaven, Wonpil Im, Jeffery B.Klauda. An Extensive Simulation Study of Lipid Bilayer Properties with Different Head Groups, Acyl Chain Lengths, and Chain Saturations. Biochimica et Biophysica Acta-Biomembranes. 1858, 3093-3104 (2016). doi:10.1016/j.bbamem.2016.09.016
  55. Xiuquan Zhou, Brandon Wilfong, Hector Vivanco, Johnpierre Paglione, Craig M. Brown, and Efrain E. Rodriguez. Metastable Layered Cobalt Chalcogenides from Topochemical Deintercalation. ournal of the American Chemical Society 2016 138 (50), 16432-16442. doi:10.1021/jacs.6b10229
  56. Xue, Y. and B. A. Forman. Atmospheric and forest decoupling from passive microwave brightness temperature observations over snow-covered terrain in North America. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing PP(99):01-18 October 2016.. doi:10.1109/JSTARS.2016.2614158
  57. Xue, Y. and B. A. Forman. Towards improved snow mass estimation in Alaska: Integration of satellite-based passive microwave brightness temperatures with support vector machines into an ensemble-based land data assimilation system. American Geophysical Union, Fall General Assembly 2016, abstract id. H33H-1665.
  58. Yanghua He, Minyan Song, Yi Zhang, Xizhi Li, Jiuzhou Song, Yuan Zhang, and Ying Yu. Whole-genome regulation analysis of histone H3 lysin 27 trimethylation in subclinical mastitis cows infected by Staphylococcus aureus. BMC Genomics 17: 565 (2016). doi:10.1186/s12864-016-2947-0

2015

  1. B. A. Forman and Y. Xue. Machine learning predictions of passive microwave brightness temperature over snow-covered land using the Special Sensor Microwave Imager (SSM/I). Physical Geography Vol. 38, Iss. 2, 2017. doi:10.1080/02723646.2016.1236606
  2. Charles W Schwartz, Barton A Forman, and Christopher W Leininger. Alternative source of climate data for mechanistic-empirical pavement performance prediction. Transportation Research Record: Journal of the Transportation Research Board, 2524: 83--91, 2015. doi:10.3141/2524-08
  3. David Winogradoff, Haiqing Zhao, Yamini Dalal, and Garegin A. Papoian. Shearing of the CENP-A dimerization interface mediates plasticity in the octameric centromeric nucleosome. Sci Rep; 2015, 5, 17038 DOI: 10.1038/srep17038. doi:10.1038/srep17038
  4. Dong-Ling Deng, J. H. Pixley, Xiaopeng Li, and S. Das Sarma. Exponential orthogonality catastrophe in single-particle and many-body localized systems. Phys. Rev. B 92, 220201(R) (2015). doi:10.1103/PhysRevB.92.220201
  5. E. Polisensky, and M. Ricotti. Fingerprints of the initial conditions on the density profiles of cold and warm dark matter haloes. Monthly Notices of the Royal Astronomical Society 450, 2172–2184 (2015). doi:10.1093/mnras/stv736
  6. Forman, B. A.. Feasibility of passive microwave brightness temperature assimilation over snow covered land using machine learning. 72nd Eastern Snow Conference, Sherbrooke, Quebec, Canada, 2015.
  7. Forman, B. A.. Synthetic tests of passive microwave brightness temperature assimilation over snow covered land using machine learning algorithms. American Geophysical Union Annual Meeting, San Francisco, California, United States, 2015.
  8. J. P. White, E. D. Link, A. C. Trouvé, P. B. Sunderland, A. W. Marshall, J. A. Sheffel, M. L. Corn, M. B. Colket, M. Chaos, H.-Z. Yu. Radiative emissions measurements from a buoyant, turbulent line flame under oxidizer-dilution quenching conditions. Fire Safety J. 76:74-84 (2015). doi:10.1016/j.firesaf.2015.05.003
  9. K. W. Mahmud, R. Wilson, M. Foss-Feig, M. Hafezi. Driven-dissipative bosons in open boundary and inhomogeneous cavity arrays. KITP, Oct 2015, UC Santa Barbara, CA.
  10. Kai He, Feng Lin, Yizhou Zhu, Xiqian Yu, Jing Li, Ruoqian Lin, Dennis Nordlund, Tsu-Chien Weng, Ryan M. Richards, Xiao-Qing Yang, Marca M. Doeff, Eric A. Stach, Yifei Mo, Huolin L. Xin, and Dong Su. Sodiation Kinetics of Metal Oxide Conversion Electrodes: a Comparative Study with Lithiation. Nano Letters, 15, 5755–5763 (2015). doi:10.1021/acs.nanolett.5b01709
  11. Kang, H & J.B. Klauda. Molecular Dynamics Simulations of Palmitoyloleoyl-phosphatidylglycerol Bilayers. Molecular Simulation. 41: 948-954 (2015). doi:10.1080/08927022.2014.926548
  12. M. C. Rochoux, C. Emery, S. Ricci, B. Cuenot, A. Trouve. Towards predictive data-driven simulations of wildfire spread. Part II: Ensemble Kalman Filter for the state estimation of a front-tracking simulator of wildfire spread. Nat. Hazards Earth Syst. Sci. 15:1721-1739 (2015). doi:10.5194/nhess-15-1721-2015
  13. Mark Z. Ma, Ruxian Lin, José Carrillo, Manisha Bhutani, Ashutosh Pathak, Hening Ren, Yaokun Li, Jiuzhou Song, and Li Maoa. ΔDNMT3B4-del Contributes to Aberrant DNA Methylation Patterns in Lung Tumorigenesis. EBioMedicine. 2015 Oct; 2(10): 1340–1350. doi: 10.1016/j.ebiom.2015.09.002
  14. Michael McCutchen, Lang G. Chen, Harry Bermudez, and Silvina Matysiak. The Interplay of Dynamical Properties Between Ionic Liquids and Ionic Surfactants: Mechanism and Aggregation. J. Phys. Chem. B, 2015, 119 (30), pp 9925–9932. doi:10.1021/acs.jpcb.5b05151
  15. Paul G. Arias, Vivien R. Lecoustre, Somesh Roy, Zhaoyu Luo, Daniel C. Haworth, Tianfeng Lu, Arnaud Trouvé and Hong G. Im. Dynamics of flow-soot interaction in wrinkled nonpremixed ethylene-air flames. Combust. Theory Modellin 19:568-586 (2015). doi:10.1080/13647830.2015.1067331 CrossMark Logo
  16. Pouyan Khakbaz and Jeffery B.Klauda. Probing the Importance of Lipid Diversity in Cell Membranes via Molecular Simulation. Chemical Physics of Lipids. 192: 12-22 (2015). doi:10.1016/j.chemphyslip.2015.08.003
  17. R.-L. Ballouz, D. C. Richardson, P. Michel, S. R. Schwartz, Y. Yu. Numerical simulations of collisional disruption of rotating gravitational aggregates: Dependence on material properties. Planet. Space Sci., 107, 29-35 (2015). doi:10.1016/j.pss.2014.06.003
  18. Ryan M Konas, John L Daristotle, Ndubuisi B Harbor, and Jeffery B Klauda. Biophysical Changes of Lipid Membranes in the Presence of Ethanol at Varying Concentrations. Journal of Physical Chemistry B. 119: 13134-13141 (2015). doi:10.1021/acs.jpcb.5b06066
  19. S. Vilfayeau, N. Ren, Y. Wang, A. Trouvé. Numerical simulation of under-ventilated liquid-fueled compartment fires with flame extinction and thermally-driven fuel evaporation. Proc. Combust. Inst. 35:2563–2571 (2015). doi:10.1016/j.proci.2014.05.072
  20. Scott Lawrence, Justin G. Tervala, Paulo F. Bedaque, Paulo F., and M. Coleman Miller. An Upper Bound on Neutron Star Masses from Models of Short Gamma-Ray Bursts. The Astrophysical Journal, 808, 186 (2015). doi:10.1088/0004-637X/808/2/186
  21. Sriram Ganeshan, J.H. Pixley, and S. Das Sarma. Nearest Neighbor Tight Binding Models with an Exact Mobility Edge in One Dimension. Phys. Rev. Lett. 114, 146601 (2015). doi:10.1103/PhysRevLett.114.146601
  22. Viviana Monje-Galvan and Jeffery B Klauda. Modeling Yeast Organelle Membranes and How Lipid Diversity Influences Bilayer Properties. Biochemistry. 54: 6852-6861 (2015). doi:10.1021/acs.biochem.5b00718
  23. Xiaopeng Li, Sriram Ganeshan, J.H. Pixley, and S. Das Sarma. Many-Body Localization and Quantum Nonergodicity in a Model with a Single-Particle Mobility Edge. Phys. Rev. Lett. 115, 186601 (2015). doi:10.1103/PhysRevLett.115.186601
  24. Xingfeng He and Yifei Mo. Accelerated Materials Design of Na0.5Bi0.5TiO3 Oxygen Ionic Conductors Based on First Principles Calculations. Physical Chemistry Chemical Physics, 17, 18035-18044 (2015). doi:10.1039/C5CP02181B
  25. Xue, Y. , B. A. Forman, and X. Tao. Can the predictability of the snow water equivalent be enhanced through forest decoupling using leaf area index across snow-covered regions?. 72nd Eastern Snow Conference, Sherbrooke, Quebec, Canada, 2015.
  26. Xue, Y. and B. A. Forman. Investigating the role of total precipitable water and leaf area index in the decoupling of passive microwave brightness temperatures over snowcovered regions of forested terrain in North America. American Geophysical Union Annual Meeting, San Francisco, California, United States, 2015.
  27. Y. Xue and B. A. Forman. Comparison of passive microwave brightness temperature prediction sensitivities over snow-covered land in North America using machine learning algorithms and the Advanced Microwave Scanning Radiometer. Remote Sensing of the Environment, 170:153-165, December 2015. doi:10.1016/j.rse.2015.09.009
  28. Yang X, Gao M, Chen G, Pierce BG, Lu J, Weng NP, Mariuzza RA. Structural Basis for Clonal Diversity of the Public T Cell Response to a Dominant Human Cytomegalovirus Epitope. J Biol Chem. 2015 Nov 27;290(48):29106-19. doi:10.1074/jbc.M115.691311
  29. Yizhou Zhu, Xingfeng He, Yifei Mo. First Principles Study on Electrochemical and Chemical Stability of the Solid Electrolyte-Electrode Interfaces in All-Solid-State Li-ion Batteries. Journal of Materials Chemistry A, 4, 3253-3266 (2016). doi:10.1039/c5ta08574h
  30. Yizhou Zhu, Xingfeng He, Yifei Mo. Origin of Outstanding Stability in the Lithium Solid Electrolyte Materials: Insights from Thermodynamic Analyses Based on First-Principles Calculations. ACS Applied Materials & Interfaces, 7, 23685-23693 (2015). doi:10.1021/acsami.5b07517

2014

  1. Bin Zhang. 4DVAR Data Assimilation with Chesapeake Bay Operational Forecasting System. NOAA/NOS/COOPS, Silver Spring, 06/2014.
  2. Bin Zhang, Christopher W. Brown, et al.. Comparison of 4D-VAR and LETKF in Assimilating JPSS-derived Sea-surface Temperature in the Chesapeake Bay Operational Forecasting System. NOAA/NOS/COOPS, 12/04/2015.
  3. Bin Zhang, Matt Hoffman, Lyon Lanerolle, Chris Brown. 4DVAR and LETKF Data Assimilation for the NOAA Chesapeake Bay Operational Forecasting System.. Chesapeake Modeling Symposium, Annapolis, Maryland, 2014.
  4. Bin Zhang, Matt Hoffman, Lyon W. J. Lanerolle, and Christopher W. Brown. 4DVAR and LETKF Data Assimilation for the NOAA Chesapeake Bay Operational Forecasting System. JCSDA Annual Review Meeting, Silver Spring, 05/2014.
  5. Lee, S., A. Tran, M. Allsopp, J.B. Lim, J. Hénin, & J.B. Klauda. CHARMM36 United-Atom Chain Model for Lipids and Surfactants. J. Phys. Chem. B. 118: 547-556 (2014). doi:10.1021/jp410344g
  6. Subramanian, D. J.B. Klauda, and M.A. Anisimov. Mesoscale Phenomena in Ternary Solutions of Tertiary Butyl Alcohol, Water, and Propylene Oxide. J. Phys. Chem. B. 118: 5994-6006 (2014). doi:10.1021/jp4125183
  7. Venable, R.M., A.J. Sodt, B. Rogaski, H. Rui, E. Hatcher, A.D. MacKerell, Jr., R.W. Pastor, and J.B. Klauda. CHARMM All-Atom Additive Force Field for Sphingomyelin: Elucidation of Hydrogen Bonding and of Positive Curvature. Biophys. J. 107: 134-145 (2014). doi:10.1016/j.bpj.2014.05.034
  8. Zhuang, X., J.R. Makover, W. Im, & J.B. Klauda. A Systematic Molecular Dynamics Simulation Study of Temperature Dependent Bilayer Structural Properties. BBA-Biomemb. 1838: 2520-2529 (2014). doi:10.1016/j.bbamem.2014.06.010

2013

  1. F Zhang, XZ Liang, Y Gu, S Su. Cloud-Aerosol-Radiation (CAR) ensemble modeling system: Overall accuracy and efficiency. Adv. Atmos. Sci. (2013) 30: 955. doi:10.1007/s00376-012-2171-z
  2. Longhua Hu and Garegin A. Papoian. Molecular Transport Modulates the Adaptive Response of Branched Actin Networks to an External Force. J. Phys. Chem. B.; 2013, 117, 13388-13396. doi:10.1021/jp405179e
  3. Subramanian, D., C.T. Boughter, J.B. Klauda, B. Hammouda, and M.A. Anisimov. Mesoscale inhomogeneities in aqueous solutions of small amphiphilic molecules. Faraday Discuss. 167: 217-238 (2013).
  4. Subramanian, D., J.B. Klauda, J. Leys, and M.A. Anisimov. Thermodynamic Anomalies and Structural Fluctuations in Aqueous Solutions of Tertiary Butyl Alcohol. Herald of St. Petersburg University (Vestnik) 2013, 4, 139 - 153.
  5. Villanueva, D.Y., J.B. Lim, & J.B. Klauda. Influence of Ester-modified Lipids on Bilayer Structure. Langmuir. 29, 14196-14203 (2013). doi:10.1021/la403919h
  6. XZ Liang, F Zhang. Cloud-Aerosol-Radiation (CAR) ensemble modeling system. Atmos. Chem. Phys., 13, 8335-8364, 2013. doi:10.5194/acp-13-8335-2013

2012

  1. Davit A. Potoyan and Garegin A. Papoian. Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation. Proc. Natl. Acad. Sci. USA; 2012, 109, 17857-17862. doi:10.1073/pnas.1201805109
  2. Davit A. Potoyan, Pavel I. Zhuravlev and Garegin A. Papoian. Computing Free Energy of a Large-Scale Allosteric Transition in Adenylate Kinase using All Atom Explicit Solvent Simulations. J. Phys. Chem. B.; 2012,116, 1709-1715. doi:10.1021/jp209980b
  3. Ezzeldin, H.M., J.B. Klauda, & S.D. Solares. Modeling of the Major Gas Vesicle Protein, GvpA: from Protein Sequence to Vesicle Wall Structure. J. Struct. Biol. 179, 18-28 (2012). doi:10.1016/j.jsb.2012.04.015
  4. F Zhang, S Su, X Liang. Dominant role of geometric association on cloud radiative forcing. Abstract A51C-0061 presented at 2012 Fall Meeting, AGU, San Francisco, Calif., 3-7 Dec.
  5. Feng Zhang, X. Liang, S. Su, and X. Kang. Cloud-Aerosol-Radiation Ensemble Modeling System (CAR): One Application on Aerosol Climate Effects. 2012 DOE ASR meeting.
  6. Klauda, J.B., V. Monje, T. Kim, and W. Im. Improving the CHARMM Force Field for Polyunsaturated Fatty Acid Chains. J. Phys. Chem. B. 116, 9424-9431 (2012). doi:10.1021/jp304056p
  7. Lim, J.B., B. Rogaski & J.B. Klauda. Update of the Cholesterol Force Field Parameters in CHARMM. J. Phys. Chem. B. 116, 203-210 (2012). doi:10.1021/jp207925m
  8. Pandit, K.R. & J.B. Klauda. Membrane models of E. coli containing cyclic moieties in the aliphatic lipid chain. BBA-Membranes. 1818, 1205-1210. (2012). doi:10.1016/j.bbamem.2012.01.009
  9. Rogaski, B & J.B. Klauda. Membrane-binding Mechanism of a Peripheral Membrane Protein through Microsecond Molecular Dynamics Simulations. J. Mol. Bio. 423, 847-861 (2012). doi:10.1016/j.jmb.2012.08.015

2011

  1. Chen, Hua and Zhang, Da-Lin and Carton, James and Atlas, Robert. On the rapid intensification of Hurricane Wilma (2005). Part I: Model prediction and structural changes.. Weather and Forecasting, 26, 885-901. (2011). doi:10.1175/WAF-D-11-00001.1
  2. F Zhang, X Liang, S Su. Cloud-Aerosol-Radiation Ensemble Modeling System. Abstract A21H-05 presented at 2011 Fall Meeting, AGU, San Francisco, Calif., 5-9 Dec.
  3. Lim, J.B. & J.B. Klauda. Lipid chain branching at the Iso- and Anteiso-Positions in Complex Chlamydia Membranes: A Molecular Dynamics Study. BBA-Membranes. 1808, 323-331 (2011). doi:10.1016/j.bbamem.2010.07.036
  4. O'Connor, J.W & J.B. Klauda. Lipid Membranes with a Majority of Cholesterol: Applications to the Ocular Lens and Aquaporin 0. J. Phys. Chem. B. 115, 6455-5464 (2011). doi:10.1021/jp108650u

2010

  1. Jo, S.H., H. Rui, J.B. Lim, J.B. Klauda, & W. Im. Cholesterol Flip-Flop: Insights from Free Energy Simulation Studies. J. Phys. Chem. B. 114, 13342-13348 (2010). doi:10.1021/jp108166k
  2. Klauda, J.B., R.M. Venable, J.A. Freites, J.W. O'Connor, D.J. Tobias, C. Mondragon-Ramirez, I. Vorobyov, A.D. MacKerell, Jr., & R.W. Pastor. Update of the CHARMM all-atom additive force field for lipids: Validation on six lipid types. J. Phys. Chem. B. 114, 7830-7843 (2010). doi:10.1021/jp101759q
  3. Pendse, P.Y., B.R. Brooks & J.B. Klauda. Probing the Periplasmic-open State of Lactose Permease in Response to Sugar Binding and Proton Translocation. J. Mol. Biol. 404, 506-521 (2010). doi:10.1016/j.jmb.2010.09.045
  4. Rogaski, B., J.B. Lim, & J.B. Klauda. Sterol Binding and Membrane Lipid Attachment to the Osh4 Protein of Yeast. J. Phys. Chem. B. 114, 13562-13573 (2010). doi:10.1021/jp106890e

2009

  1. Jo, S.H., J.B. Lim, J.B. Klauda, & W. Im. CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes. Biophys. J. 97, 50-58 (2009). doi:10.1016/j.bpj.2009.04.013





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