fastqc: quality control tool for high throughput sequence data.

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: fastqc
Description: quality control tool for high throughput sequence data.
For more information: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Categories:
License: Unknown

General usage information

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It imports data from BAM, SAM, or FastQ files and creates summary graphs, tables and HTML based permanent reports.

This module will add the fastqc command to your PATH

Available versions of the package fastqc, by cluster

This section lists the available versions of the package fastqcon the different clusters.

Available versions of fastqc on the Deepthought2 cluster (RHEL8)

Available versions of fastqc on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
0.11.7 fastqc/0.11.7 ivybridge Y

Available versions of fastqc on the Juggernaut cluster

Available versions of fastqc on the Juggernaut cluster
Version Module tags CPU(s) optimized for GPU ready?
0.11.7 fastqc/0.11.7 skylake_avx512 Y