hdf5: Libraries for Hierarchical Data Format v5

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: hdf5
Description: Libraries for Hierarchical Data Format v5
For more information: http://www.hdfgroup.org
Categories:
License: OpenSource (HDF Software License)

General usage information

The Hierarchical Data Format (v5) is a file format designed to store and organize large amounts of numerical data. This package consists of library routines for reading and manipulating data in this format.

The following environmental variables have been defined:

  • \$HDF5_ROOT has been set to the root of the hdf5 installation
  • \$HDF5_LIBDIR points to the directory containing the libraries
  • \$HDF5_INCDIR points to the directory containing the header files

You will probably wish to use these by adding the following flags to your compilation command (e.g. to CFLAGS in your Makefile):

  • -I\$HDF5_INCDIR
and the following flags to your link command (e.g. LDFLAGS in your Makefile):
  • -L\$HDF5_LIBDIR -Wl,-rpath,\$HDF5_LIBDIR

Available versions of the package hdf5, by cluster

This section lists the available versions of the package hdf5on the different clusters.

Available versions of hdf5 on the Deepthought2 cluster (RHEL8)

Available versions of hdf5 on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
1.10.6 hdf5/1.10.6 ivybridge, x86_64, zen Y

Available versions of hdf5 on the Juggernaut cluster

Available versions of hdf5 on the Juggernaut cluster
Version Module tags CPU(s) optimized for GPU ready?
1.10.6 hdf5/1.10.6 x86_64 Y
1.10.6 hdf5/1.10.6 skylake_avx512, x86_64, zen, zen2 Y

Available versions of hdf5 on the Deepthought2 cluster (RHEL6) [DEPRECATED]

Available versions of hdf5 on the Deepthought2 cluster (RHEL6) [DEPRECATED]
Version Module tags CPU(s) optimized for GPU ready?
1.10.5
  • 1.10.5
  • (a.k.a hdf5/1.10.5/gnu/9.1.0/openmpi/4.0.1/shared)
  • (a.k.a hdf5/gnu/9.1.0/openmpi/4.0.1/shared/1.10.5)
ivybridge N
1.10.0
  • 1.10.0
  • (a.k.a hdf5/1.10.0/gnu/6.1.0/openmpi/1.10.2/shared)
  • (a.k.a hdf5/1.10.0/intel/2016.3.210/intelmpi/shared)
  • (a.k.a hdf5/1.10.0/intel/2016.3.210/intelmpi-mt/shared)
  • (a.k.a hdf5/1.10.0/intel/2016.3.210/openmpi/1.10.2/shared)
ivybridge N
1.18.15p1
  • 1.18.15p1
  • (a.k.a hdf5/1.8.15p1/gnu/4.9.3/openmpi/1.8.6/shared)
  • (a.k.a hdf5/1.8.15p1/intel/2015.0.3.032/openmpi/1.8.6/shared)
  • (a.k.a hdf5/1.8.15p1/intel/2015.0.3.032/intel-mt/shared)
  • (a.k.a hdf5/1.8.15p1/sunstudio/12.4/openmpi/1.8.6/shared)
  • (a.k.a hdf5/gnu/4.9.3/openmpi/1.8.6/shared/1.8.15p1)
  • (a.k.a hdf5/intel/2015.0.3.032/intelmpi-mt/shared/1.8.15p1)
  • (a.k.a hdf5/intel/2015.0.3.032/openmpi/1.8.6/shared/1.8.15p1)
  • (a.k.a hdf5/sunstudio/12.4/openmpi/1.8.6/shared/1.8.15p1)
ivybridge N
1.18.13
  • 1.18.13
  • (a.k.a hdf5/1.8.13/gnu/4.8.1/openmpi/1.8.1/shared)
  • (a.k.a hdf5/1.8.13/gnu/4.8.1/nompi/shared)
  • (a.k.a hdf5/1.8.13/gnu/4.6.1/openmpi/1.6.5/shared)
  • (a.k.a hdf5/1.8.13/gnu/4.6.1/nompi/shared)
  • (a.k.a hdf5/1.8.13/intel/2013.1.039/openmpi/1.8.1/shared)
  • (a.k.a hdf5/1.8.13/intel/2013.1.039/intel-mt/shared)
  • (a.k.a hdf5/1.8.13/intel/2013.1.039/intel/shared)
ivybridge N