hmmer: biosequence analyser using profile hidden Markov models

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: hmmer
Description: biosequence analyser using profile hidden Markov models
For more information: http://hmmer.org/
Categories:
License: OpenSource (BSD-3)

General usage information

HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

This module will add the jackhmmer, nhmmer, phmmer and related commands to your PATH

Available versions of the package hmmer, by cluster

This section lists the available versions of the package hmmeron the different clusters.

Available versions of hmmer on the Deepthought2 cluster (RHEL8)

Available versions of hmmer on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
3.3 hmmer/3.3 ivybridge, x86_64 Y

Available versions of hmmer on the Juggernaut cluster

Available versions of hmmer on the Juggernaut cluster
Version Module tags CPU(s) optimized for GPU ready?
3.3 hmmer/3.3 skylake_avx512, x86_64, zen Y

Available versions of hmmer on the Deepthought2 cluster (RHEL6) [DEPRECATED]

Available versions of hmmer on the Deepthought2 cluster (RHEL6) [DEPRECATED]
Version Module tags CPU(s) optimized for GPU ready?
3.3
  • 3.3
  • (a.k.a hmmer/gnu/6.1.0/openmpi/1.10.2/3.3)
x86_64 N