igv: Integrative Genomics Viewer

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: igv
Description: Integrative Genomics Viewer
For more information: http://software.broadinstitute.org/software/igv
Categories:
License: OpenSource (MIT)

General usage information

The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.

This module will add the commands igv.sh, which launches java, and the command-line tool igvtools to your PATH

Available versions of the package igv, by cluster

This section lists the available versions of the package igvon the different clusters.

Available versions of igv on the Deepthought2 cluster (RHEL8)

Available versions of igv on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
2.8.0 igv/2.8.0 ivybridge Y

Available versions of igv on the Juggernaut cluster

Available versions of igv on the Juggernaut cluster
Version Module tags CPU(s) optimized for GPU ready?
2.8.0 igv/2.8.0 skylake_avx512 Y