kallisto: Program for RNA-sequence quantification
Overview of package
|Description:||Program for RNA-sequence quantification|
|For more information:||https://pachterlab.github.io/kallisto/about|
|License:||OpenSource (BSD 2-Clause)|
General usage information
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
Available versions of the package kallisto, by cluster
This section lists the available versions of the package kallistoon the different clusters.
Available versions of kallisto on the Deepthought2 cluster (RHEL8)
|Version||Module tags||CPU(s) optimized for||GPU ready?|