popoolation2: PoPoolation2 allows to compare allele frequencies for single-nucleotide polymorphisms.

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: popoolation2
Description: PoPoolation2 allows to compare allele frequencies for single-nucleotide polymorphisms.
For more information: https://sourceforge.net/p/popoolation2/wiki/Main
Categories:
License: Unknown

General usage information

PoPoolation2 allows to compare allele frequencies for single-nucleotide polymorphisms between tow or more populations and to identify significant differences. It requires next generation sequencing data of pooled genomic DNA (Pool-Seq) and may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution.

This module will add java, perl, python, bwa, fastqc, igv, igvtools, samtools and related commands to your PATH.

Available versions of the package popoolation2, by cluster

This section lists the available versions of the package popoolation2on the different clusters.

Available versions of popoolation2 on the Deepthought2 cluster (RHEL8)

Available versions of popoolation2 on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
1201 popoolation2/1201 ivybridge Y