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SHAPEIT4: estimation of haplotypes for sequencing data.

Contents

  1. Overview of package
    1. General usage
  2. Availability of package by cluster

Overview of package

General information about package
Package: SHAPEIT4
Description: estimation of haplotypes for sequencing data.
For more information: https://odelaneau.github.io/shapeit4
Categories:
License: OpenSource (MIT)

General usage information

SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.

This module will add the shapeit4 command to your PATH.

Available versions of the package SHAPEIT4, by cluster

This section lists the available versions of the package SHAPEIT4on the different clusters.

Available versions of SHAPEIT4 on the Zaratab cluster

Available versions of SHAPEIT4 on the Zaratab cluster
Version Module tags CPU(s) optimized for GPU ready?
4.1.3 shapeit4/4.1.3 zen2 Y
4.2.2 shapeit4/4.2.2 icelake, x86_64, zen2 Y






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