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stacks: pipeline for building loci from short-read sequences

Contents

  1. Overview of package
    1. General usage
  2. Availability of package by cluster

Overview of package

General information about package
Package: stacks
Description: pipeline for building loci from short-read sequences
For more information: https://catchenlab.life.illinois.edu/stacks
Categories:
License: Unknown

General usage information

Stacks is a software pipeline for building loci from short-read read aligner for short DNA sequences (reads) from next-gen sequences, such as those generated on the Illumina platform.

Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

This module will add the cstacks, ustacks and related commands to your PATH

Available versions of the package stacks, by cluster

This section lists the available versions of the package stackson the different clusters.

Available versions of stacks on the Zaratab cluster

Available versions of stacks on the Zaratab cluster
Version Module tags CPU(s) optimized for GPU ready?
2.67 stacks/2.67 zen2 Y






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