trinity: trinity is a novel method to reconstruct transcriptomes for RNA-seq data.

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: trinity
Description: trinity is a novel method to reconstruct transcriptomes for RNA-seq data.
For more information: http://trinityrnaseq.github.io
Categories:
License: Unknown ((c) 2014, trinityrnaseq)

General usage information

Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

This module will add trinity and related commands to your PATH.

Available versions of the package trinity, by cluster

This section lists the available versions of the package trinityon the different clusters.

Available versions of trinity on the Deepthought2 cluster (RHEL8)

Available versions of trinity on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
2.6.6 trinity/2.6.6 ivybridge Y