trinity: trinity is a novel method to reconstruct transcriptomes for RNA-seq data.
Overview of package
|Description:||trinity is a novel method to reconstruct transcriptomes for RNA-seq data.|
|For more information:||http://trinityrnaseq.github.io|
|License:||Unknown ((c) 2014, trinityrnaseq)|
General usage information
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
Available versions of the package trinity, by cluster
This section lists the available versions of the package trinityon the different clusters.
Available versions of trinity on the Deepthought2 cluster (RHEL8)
|Version||Module tags||CPU(s) optimized for||GPU ready?|