xssp: Secondary structure assignments for entries in the Protein Data Bank

Contents

  1. Overview of package
  2. Overview of package
    1. General usage
  3. Availability of package by cluster

Overview of package

General information about package
Package: xssp
Description: Secondary structure assignments for entries in the Protein Data Bank
For more information: https://swift.cmbi.umcn.nl/gv/dssp
Categories:
License: OpenSource (Boost license)

General usage information

The DSSP program was designed to standardize secondary structure assignment. DSSP is a database of secondary structure assignments for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.

This module will add the various DSSP utilities (hsspconv, mkdssp, mkhssp, etc) to your PATH.

Available versions of the package xssp, by cluster

This section lists the available versions of the package xsspon the different clusters.

Available versions of xssp on the Deepthought2 cluster (RHEL8)

Available versions of xssp on the Deepthought2 cluster (RHEL8)
Version Module tags CPU(s) optimized for GPU ready?
3.0.10 xssp/3.0.10 ivybridge Y

Available versions of xssp on the Juggernaut cluster

Available versions of xssp on the Juggernaut cluster
Version Module tags CPU(s) optimized for GPU ready?
3.0.10 xssp/3.0.10 skylake_avx512, x86_64, zen Y