freebayes: Haplotype-based variant detector

Overview of package

Package:	freebayes
Description:	Haplotype-based variant detector
For more information:	https://github.com/freebayes/freebayes
Categories:	Genomics
License:	OpenSource (MIT)

General Usage

freebayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically single-nucleotide polymorphisms (SNPs), indels (insertions and deletions), multi-nucleotide polymorpisms (MNPs) and complex events (composite insertion and substitution evens) smaller than the length of a short-read sequencing alignment.

This module will add the freebayes and bamleftalign commands to your PATH.

Available versions by cluster

This section lists the available versions of the package freebayeson the UMD HPC clusters.

Versions available on the Zaratan cluster

Version	Module tags	CPU(s) optimized for	GPU ready?
1.3.6	1.3.6	zen2	Yes