GATK: Genome Analysis Tool Kit
Overview of package
| Package: | GATK |
|---|---|
| Description: | Genome Analysis Tool Kit |
| For more information: | https://gatk.broadinstitute.org/hc/en-us |
| Categories: | Genomics |
| License: | OpenSource (Apache2) |
General Usage
The Genome Analysis TookKit (GATK) is a package for the analysis of high-throughput sequencing data. It offers a diverse selection of tools, primarily focussing on variant discovery and genotyping with a strong emphasis on data quality assurance
This module will add the gatk command to your PATH.
Available versions by cluster
This section lists the available versions of the package GATKon the UMD HPC clusters.
Versions available on the Zaratan cluster
| Version | Module tags | CPU(s) optimized for | GPU ready? |
|---|---|---|---|
| 4.4.0.0 | 4.4.0.0 | icelake, x86_64, zen2 | Yes |
| 4.2.6.1 | 4.2.6.1 | zen2 | Yes |