kallisto: Program for RNA-sequence quantification

Overview of package

Package:	kallisto
Description:	Program for RNA-sequence quantification
For more information:	https://pachterlab.github.io/kallisto/about
Categories:	Genomics
License:	OpenSource (BSD 2-Clause)

General Usage

kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.

This module will add the kallisto command to your PATH

Available versions by cluster

This section lists the available versions of the package kallistoon the UMD HPC clusters.

Versions available on the Zaratan cluster

Version	Module tags	CPU(s) optimized for	GPU ready?
0.46.2	0.46.2	zen2	Yes