popoolation2: PoPoolation2 allows to compare allele frequencies for single-nucleotide polymorphisms.

Overview of package

Package:	popoolation2
Description:	PoPoolation2 allows to compare allele frequencies for single-nucleotide polymorphisms.
For more information:	https://sourceforge.net/p/popoolation2/wiki/Main
Categories:	Genomics
License:	Unknown

General Usage

PoPoolation2 allows to compare allele frequencies for single-nucleotide polymorphisms between tow or more populations and to identify significant differences. It requires next generation sequencing data of pooled genomic DNA (Pool-Seq) and may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution.

This module will add java, perl, python, bwa, fastqc, igv, igvtools, samtools and related commands to your PATH.

Available versions by cluster

This section lists the available versions of the package popoolation2on the UMD HPC clusters.

Versions available on the Zaratan cluster

Version	Module tags	CPU(s) optimized for	GPU ready?
1201	1201	zen2	Yes