SHAPEIT4: estimation of haplotypes for sequencing data.
Overview of package
| Package: | SHAPEIT4 |
|---|---|
| Description: | estimation of haplotypes for sequencing data. |
| For more information: | https://odelaneau.github.io/shapeit4 |
| Categories: | Genomics |
| License: | OpenSource (MIT) |
General Usage
SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.
This module will add the shapeit4 command to your PATH.
Available versions by cluster
This section lists the available versions of the package SHAPEIT4on the UMD HPC clusters.
Versions available on the Zaratan cluster
| Version | Module tags | CPU(s) optimized for | GPU ready? |
|---|---|---|---|
| 4.2.2 | 4.2.2 | icelake, x86_64, zen2 | Yes |
| 4.1.3 | 4.1.3 | zen2 | Yes |