SnpEff: Genomic variant annotation and functional effect prediction
Overview of package
| Package: | SnpEff |
|---|---|
| Description: | Genomic variant annotation and functional effect prediction |
| For more information: | http://snpeff.sourceforge.net/ |
| Categories: | Genomics |
| License: | OpenSource (MIT) |
General Usage
SnpEff is a toolkit for genetic variant annotation and functional effect prediction. It annotates and predicts the effects of genetic variants on genes and proteins (e.g. amino acid changes).
This module will add the snpEff command to your PATH.
Available versions by cluster
This section lists the available versions of the package SnpEffon the UMD HPC clusters.
Versions available on the Zaratan cluster
| Version | Module tags | CPU(s) optimized for | GPU ready? |
|---|---|---|---|
| 2017-11-24 | 2017-11-24 | icelake, x86_64, zen2 | Yes |