stacks: pipeline for building loci from short-read sequences

Overview of package

Package:	stacks
Description:	pipeline for building loci from short-read sequences
For more information:	https://catchenlab.life.illinois.edu/stacks
Categories:	Genomics
License:	Unknown

General Usage

Stacks is a software pipeline for building loci from short-read read aligner for short DNA sequences (reads) from next-gen sequences, such as those generated on the Illumina platform.

Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

This module will add the cstacks, ustacks and related commands to your PATH

Available versions by cluster

This section lists the available versions of the package stackson the UMD HPC clusters.

Versions available on the Zaratan cluster

Version	Module tags	CPU(s) optimized for	GPU ready?
2.67	2.67	zen2	Yes