xssp: Secondary structure assignments for entries in the Protein Data Bank
Overview of package
| Package: | xssp |
|---|---|
| Description: | Secondary structure assignments for entries in the Protein Data Bank |
| For more information: | https://swift.cmbi.umcn.nl/gv/dssp |
| Categories: | MolecularDynamics |
| License: | OpenSource (Boost license) |
General Usage
The DSSP program was designed to standardize secondary structure assignment. DSSP is a database of secondary structure assignments for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.
This module will add the various DSSP utilities (hsspconv, mkdssp, mkhssp, etc) to your PATH.
Available versions by cluster
This section lists the available versions of the package xsspon the UMD HPC clusters.
Versions available on the Zaratan cluster
| Version | Module tags | CPU(s) optimized for | GPU ready? |
|---|---|---|---|
| 3.0.10 | 3.0.10 | zen | Yes |